SecReT6
I. Summary
SecReT6 ID672 insolico
StrainPseudomonas stutzeri CCUG 29243
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018028
Location4501974..4511993
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001100000
ComponentTssGTssJTssKTssM
Number0111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A458_208654497079..4498527 [-], 1449392423207succinate-semialdehyde dehydrogenase 
2A458_208704498841..4499293 [+], 453392423208cytochrome c, class II 
3A458_208754499331..4500032 [-], 702392423209nickel-dependent hydrogenase b-type cytochrome subunit 
4A458_208804500618..4500752 [+], 135392423210hypothetical protein 
5A458_208854500773..4501969 [+], 1197392423211FHA domain-containing protein  Fha
6A458_208904501974..4502456 [+], 483392423212hypothetical protein  TssJ
7A458_208954502459..4503790 [+], 1332392423213hypothetical protein  TssK
8A458_209004503796..4504677 [+], 882392423214putative outer membrane protein  TssL
9A458_209054504679..4508218 [+], 3540392423215type VI secretion protein IcmF  TssM
10A458_209104508218..4508949 [+], 732392423216serine/threonine phosphoprotein phosphatase Stp1  Stp1
11A458_209154508946..4509923 [+], 978392423217serine-threonine kinase Stk1  Stk1
12A458_209204509945..4511993 [+], 2049392423218Rhs element Vgr protein  TssI
13A458_209254512047..4514434 [+], 2388392423219hypothetical protein 
14A458_209304514431..4515192 [+], 762392423220hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1A458_207554470885..4471403 [-], 519392423185hypothetical protein PSPTO_5435

Download FASTA format files
Proteins        Genes
N/A
N/A