SecReT6
I. Summary
SecReT6 ID675 insolico
StrainPseudomonas aeruginosa DK2
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018080
Location2884928..2904897
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PADK2_133802881639..2882844 [-], 1206392984072hypothetical protein 
2PADK2_133852883045..2883686 [-], 642392984073transcriptional regulator 
3PADK2_133902883963..2884358 [+], 396392984074hypothetical protein 
4PADK2_133952884381..2884917 [-], 537392984075hypothetical protein 
5PADK2_134002884928..2886832 [-], 1905392984076hypothetical protein  TssI
6PADK2_134052886938..2887723 [-], 786392984077hypothetical protein 
7PADK2_134102887793..2888668 [-], 876392984078hypothetical protein 
8PADK2_134152888759..2891308 [-], 2550392984079ClpA/B-type protease  TssH
9PADK2_134202891310..2892326 [-], 1017392984080hypothetical protein  TssG
10PADK2_134252892290..2894083 [-], 1794392984081type VI secretion system protein ImpG  TssF
11PADK2_134302894067..2894492 [-], 426392984082hypothetical protein  TssE
12PADK2_134352894505..2895002 [-], 498392984083hypothetical protein  TssD
13PADK2_134402895076..2896560 [-], 1485392984084hypothetical protein  TssC
14PADK2_134452896583..2897128 [-], 546392984085hypothetical protein  TssB
15PADK2_134502897337..2897813 [+], 477392984086hypothetical protein 
16PADK2_134552897912..2899204 [+], 1293392984087hypothetical protein  TssK
17PADK2_134602899222..2899980 [+], 759392984088type VI secretion system protein ImpK  TssL
18PADK2_134652900192..2903800 [+], 3609392984089type VI secretion system protein ImpL  TssM
19PADK2_134702903797..2904897 [+], 1101392984090hypothetical protein  TssA
20PADK2_134752905007..2906092 [+], 1086392984091transcriptional regulator  Sfa3
21PADK2_134802906328..2906594 [+], 267392984092hypothetical protein 
22PADK2_134852906754..2907314 [+], 561392984093NADH-dependent FMN reductase MsuE 
23PADK2_134902907324..2908469 [+], 1146392984094methanesulfonate sulfonatase MsuD 
24PADK2_134952908499..2909683 [+], 1185392984095FMNH2-dependent monooxygenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA5089

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PADK2_269405827018..5829255 [-], 2238392986766hypothetical protein PA5089

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Proteins        Genes

Homology Immunity protein list
PA5087, PA5088, PA5087

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PADK2_269255824383..5825264 [-], 882392986763hypothetical protein PA5087
2PADK2_269305825261..5826142 [-], 882392986764hypothetical protein PA5088
3PADK2_269355826139..5827014 [-], 876392986765hypothetical protein PA5087

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Proteins        Genes
N/A