SecReT6
I. Summary
SecReT6 ID676 insolico
StrainPseudomonas aeruginosa DK2
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018080
Location3747882..3766857
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PADK2_173253743431..3743751 [+], 321392984859hypothetical protein 
2PADK2_173303743808..3744365 [+], 558392984860hypothetical protein 
3PADK2_17335 (folE)3744443..3744988 [+], 546392984861GTP cyclohydrolase I 
4PADK2_173403745053..3745514 [-], 462392984862hypothetical protein 
5PADK2_173453745760..3746140 [+], 381392984863hypothetical protein 
6PADK2_173503746168..3747157 [-], 990392984864serine-threonine kinase Stk1  Stk1
7PADK2_173553747154..3747882 [-], 729392984865serine/threonine phosphoprotein phosphatase Stp1  Stp1
8PADK2_173603747882..3751409 [-], 3528392984866type VI secretion protein IcmF  TssM
9PADK2_173653751425..3752294 [-], 870392984867type VI secretion system protein ImpK  TssL
10PADK2_173703752297..3753628 [-], 1332392984868hypothetical protein  TssK
11PADK2_173753753625..3754131 [-], 507392984869lipoprotein  TssJ
12PADK2_173803754137..3755330 [-], 1194392984870hypothetical protein  Fha
13PADK2_173853755348..3755488 [-], 141392984871hypothetical protein 
14PADK2_173903755577..3757088 [-], 1512392984872transcriptional regulator  Sfa2
15PADK2_173953757099..3759726 [-], 2628392984873ClpA/B-type protease  TssH
16PADK2_174003759739..3760746 [-], 1008392984874hypothetical protein  TssG
17PADK2_174053760710..3762497 [-], 1788392984875hypothetical protein  TssF
18PADK2_174103762835..3763242 [-], 408392984876hypothetical protein  TssE
19PADK2_174153763255..3764730 [-], 1476392984877hypothetical protein  TssC
20PADK2_174203764759..3765265 [-], 507392984878hypothetical protein  TssB
21PADK2_174253765301..3766857 [-], 1557392984879hypothetical protein  TssA
22PADK2_174303768029..3768631 [-], 603392984880glutathione S-transferase 
23PADK2_174353768687..3769853 [-], 1167392984881aminotransferase 
24PADK2_174403769935..3770411 [+], 477392984882transcriptional regulator 
25PADK2_174453770462..3771097 [-], 636392984883hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435 , PSPTO_5435, PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PADK2_01310290247..290765 [-], 519392981672secreted protein Hcp PSPTO_5435
2PADK2_181603925946..3926464 [+], 519392985022secreted protein Hcp PSPTO_5435
3PADK2_278656032697..6033215 [-], 519392986949secreted protein Hcp PSPTO_5435

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Proteins        Genes
N/A
N/A