SecReT6
I. Summary
SecReT6 ID677 insolico
StrainKlebsiella oxytoca E718
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018106
Location2770900..2795506
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number211111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A225_26202765928..2766647 [+], 720397657634Aspartate racemase 
2A225_26212766676..2767683 [+], 1008397657635hypothetical protein 
3A225_26222767680..2768450 [+], 771397657636hypothetical protein 
4A225_26242769504..2770067 [-], 564397657637thiJ/PfpI family protein 
5A225_26252770134..2770289 [+], 156397657638hypothetical protein 
6A225_26262770900..2771391 [+], 492397657639hypothetical protein  TssB
7A225_26272771426..2772967 [+], 1542397657640hypothetical protein  TssC
8A225_26282772981..2774324 [+], 1344397657641hypothetical protein  TssK
9A225_26292774321..2774986 [+], 666397657642hypothetical protein  TssL
10A225_26302774989..2776671 [+], 1683397657643hypothetical protein  TagL
11A225_26312776816..2777307 [+], 492397657644hypothetical protein  TssD
12A225_26322777307..2777438 [+], 132397657645hypothetical protein 
13A225_26332777554..2778141 [+], 588397657646clpB protein  TssH
14A225_26342778155..2780197 [+], 2043397657647clpB protein  TssH
15A225_26352780194..2782689 [+], 2496397657648VgrG protein  TssI
16A225_26362782942..2784909 [+], 1968397657649transmembrane protein 
17A225_26372785171..2786604 [+], 1434397657650hypothetical protein 
18A225_26382786745..2789978 [+], 3234397657651hypothetical protein  TssM
19A225_26392790074..2790352 [+], 279397657652hypothetical protein  PAAR
20A225_26402790365..2792125 [+], 1761397657653protein ImpG/VasA  TssF
21A225_26412792089..2793174 [+], 1086397657654hypothetical protein  TssG
22A225_26422793194..2793691 [+], 498397657655hypothetical protein  TssJ
23A225_26432793693..2794148 [+], 456397657656hypothetical protein  TssE
24A225_26442794172..2795506 [+], 1335397657657hypothetical protein  TssA
25A225_26452795669..2797348 [-], 1680397657658beta-xylosidase 
26A225_26462797403..2798857 [-], 1455397657659Xyloside transporter XynT 
27A225_26472799093..2800301 [+], 1209397657660IS10 transposase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Hcp , EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1A225_0518535414..535899 [+], 486397655590hypothetical protein Hcp
2A225_26312776816..2777307 [+], 492397657644hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A