SecReT6
I. Summary
SecReT6 ID678 insolico
StrainKlebsiella oxytoca E718
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018106
Location3529603..3563336
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011101101
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A225_33553525111..3526181 [-], 1071397658357ABC transporter 
2A225_33563526174..3527943 [-], 1770397658358Ferric iron ABC transporter 
3A225_33573528015..3529103 [-], 1089397658359ABC transporter 
4A225_33583529603..3530148 [-], 546397658360hypothetical protein  TssJ
5A225_33593530126..3531211 [-], 1086397658361hypothetical protein  TssG
6A225_33603531175..3532929 [-], 1755397658362protein ImpG/VasA  TssF
7A225_33613533283..3533486 [-], 204397658363hypothetical protein 
8A225_33623533797..3537267 [-], 3471397658364hypothetical protein  TssM
9A225_33633537264..3538538 [-], 1275397658365hypothetical protein 
10A225_33643541576..3541893 [-], 318397658366hypothetical protein 
11A225_33653542744..3545881 [-], 3138397658367hypothetical protein 
12A225_33663545929..3546213 [-], 285397658368hypothetical protein 
13A225_33673546717..3547040 [-], 324397658369hypothetical protein 
14A225_33693548430..3549155 [-], 726397658370hypothetical protein 
15A225_33703549260..3549889 [-], 630397658371hypothetical protein 
16A225_33713550101..3552986 [-], 2886397658372hypothetical protein 
17A225_33723553245..3554117 [-], 873397658373hypothetical protein 
18A225_33733554117..3556459 [-], 2343397658374VgrG protein  TssI
19A225_33743556456..3556767 [-], 312397658375clpB protein 
20A225_33753557108..3557599 [-], 492397658376hypothetical protein  TssD
21A225_33763557604..3559094 [-], 1491397658377outer membrane protein  TagL
22A225_33773559225..3559914 [-], 690397658378hypothetical protein  TssL
23A225_33783559911..3561251 [-], 1341397658379hypothetical protein  TssK
24A225_33793561272..3562810 [-], 1539397658380hypothetical protein  TssC
25A225_33803562845..3563336 [-], 492397658381hypothetical protein  TssB
26A225_33813563748..3563864 [-], 117397658382hypothetical protein 
27A225_33823564197..3565279 [+], 1083397658383malate dehydrogenase 
28A225_33833565517..3567667 [+], 2151397658384formate dehydrogenase H 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1A225_33753557108..3557599 [-], 492397658376hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A