SecReT6
I. Summary
SecReT6 ID679 insolico
StrainKlebsiella oxytoca E718
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018106
Location4309060..4334292
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A225_40854304166..4304924 [+], 759397659076transcriptional regulator 
2A225_40864304974..4305981 [-], 1008397659077Nucleoid-associated protein NdpA 
3A225_40874306094..4306387 [+], 294397659078hypothetical protein 
4A225_40884306449..4308167 [+], 1719397659079hydrolase of alkaline phosphatase superfamily 
5A225_40904308440..4308592 [-], 153397659080hypothetical protein 
6A225_40914308615..4309067 [-], 453397659081hypothetical protein  TssE
7A225_40924309060..4309596 [-], 537397659082hypothetical protein  TssJ
8A225_40934309577..4310671 [-], 1095397659083hypothetical protein  TssG
9A225_40944310635..4312398 [-], 1764397659084protein ImpG/VasA  TssF
10A225_40954313128..4313265 [+], 138397659085hypothetical protein 
11A225_40964313221..4313415 [-], 195397659086hypothetical protein 
12A225_40974313405..4313767 [-], 363397659087hypothetical protein  TssA
13A225_40984313767..4317168 [-], 3402397659088hypothetical protein  TssM
14A225_40994317173..4318333 [-], 1161397659089hypothetical protein 
15A225_41004319310..4321214 [-], 1905397659090hypothetical protein 
16A225_41014321755..4324370 [-], 2616397659091VgrG protein  TssI
17A225_41024324957..4325880 [+], 924397659092transposase 
18A225_41034325925..4326368 [-], 444397659093hypothetical protein 
19A225_41044326534..4327637 [-], 1104397659094clpB protein  TssH
20A225_41054327978..4328469 [-], 492397659095hypothetical protein  TssD
21A225_41064328474..4330102 [-], 1629397659096outer membrane protein  TagL
22A225_41074330202..4330855 [-], 654397659097transmembrane protein  TssL
23A225_41084330852..4332189 [-], 1338397659098hypothetical protein  TssK
24A225_41094332208..4333758 [-], 1551397659099hypothetical protein  TssC
25A225_41104333795..4334292 [-], 498397659100hypothetical protein  TssB
26A225_41114335274..4336380 [+], 1107397659101hypothetical protein 
27A225_41124336583..4337074 [+], 492397659102proteinase inhibitor I11 
28A225_41144337119..4338753 [-], 1635397659103malate:quinone oxidoreductase 
29A225_41134338723..4338854 [+], 132397659104hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1A225_41054327978..4328469 [-], 492397659095hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A