SecReT6
I. Summary
SecReT6 ID681 insolico
StrainPseudomonas stutzeri DSM 10701
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018177
Location686681..696400
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number100011111
ComponentTssGTssJTssKTssM
Number1000
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PSJM300_03050685177..686670 [-], 1494397685727Fis family transcriptional regulator  Sfa2
2PSJM300_03055686681..689260 [-], 2580397685728ATPase  TssH
3PSJM300_03060689265..690281 [-], 1017397685729hypothetical protein  TssG
4PSJM300_03065690245..692035 [-], 1791397685730hypothetical protein  TssF
5PSJM300_03070692043..692453 [-], 411397685731hypothetical protein 
6PSJM300_03075692457..692873 [-], 417397685732GPW/gp25 family protein  TssE
7PSJM300_03080692888..694363 [-], 1476397685733hypothetical protein  TssC
8PSJM300_03085694385..694891 [-], 507397685734hypothetical protein  TssB
9PSJM300_03090694910..696400 [-], 1491397685735ImpA domain-containing protein  TssA
10PSJM300_03095696970..697482 [-], 513397685736N-acetyltransferase GCN5 
11PSJM300_03100697789..699039 [+], 1251397685737acyl-CoA dehydrogenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PSJM300_00695148285..148803 [+], 519397685262hypothetical protein PSPTO_5435

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Proteins        Genes
N/A
N/A