SecReT6
I. Summary
SecReT6 ID682 insolico
StrainPseudomonas stutzeri DSM 10701
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018177
Location879933..890001
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001100000
ComponentTssGTssJTssKTssM
Number0111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PSJM300_03950875269..876486 [+], 1218397685907type 4 pilus biogenesis protein PilC 
2PSJM300_03955876489..877358 [+], 870397685908type 4 prepilin peptidase PilD 
3PSJM300_03960 (coaE)877599..878207 [+], 609397685909dephospho-CoA kinase 
4PSJM300_03965878204..878398 [+], 195397685910DNA gyrase inhibitor 
5PSJM300_03970878730..879926 [+], 1197397685911FHA domain-containing protein  Fha
6PSJM300_03975879933..880415 [+], 483397685912hypothetical protein  TssJ
7PSJM300_03980880418..881749 [+], 1332397685913hypothetical protein  TssK
8PSJM300_03985881754..882638 [+], 885397685914outer membrane protein  TssL
9PSJM300_03990882640..886179 [+], 3540397685915type VI secretion protein IcmF  TssM
10PSJM300_03995886190..886921 [+], 732397685916serine/threonine phosphoprotein phosphatase Stp1  Stp1
11PSJM300_04000886931..887896 [+], 966397685917serine-threonine kinase Stk1  Stk1
12PSJM300_04005887911..890001 [+], 2091397685918Rhs element Vgr protein  TssI
13PSJM300_04010890054..892408 [+], 2355397685919hypothetical protein 
14PSJM300_04015892877..893560 [-], 684397685920hypothetical protein 
15PSJM300_04020893665..894702 [-], 1038397685921aldo/keto reductase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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