SecReT6
I. Summary
SecReT6 ID683 insolico
StrainPseudomonas putida DOT-T1E
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018220
Location30683..64122
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1T1E_003025822..27483 [+], 1662397692800PAS/PAC sensor hybrid histidine kinase 
2T1E_003127546..29612 [+], 2067397692801PAS/PAC sensor hybrid histidine kinase 
3T1E_0032 (ygfF)29622..30509 [-], 888397692802short-chain dehydrogenase/reductase SDR 
4T1E_003330683..32668 [+], 1986397692803vgrG protein  TssI
5T1E_003432716..33147 [+], 432397692804hypothetical protein 
6T1E_0035 (rhsD)33201..37787 [+], 4587397692805RHS family protein  PAAR
7T1E_0036 (rhsA)38518..40473 [+], 1956397692806RHS family protein 
8T1E_003741042..42088 [+], 1047397692807RHS family protein 
9T1E_003842599..43276 [+], 678397692808hypothetical protein 
10T1E_0039 (pgsA)43574..44044 [-], 471397692809CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 
11T1E_0040 (uvrC)44168..45925 [-], 1758397692810UvrABC system protein C 
12T1E_0041 (repB)45998..46621 [-], 624397692811DNA-binding response regulator GacA 
13T1E_004246700..47089 [-], 390397692812helix-turn-helix domain-containing protein 
14T1E_004347197..47640 [-], 444397692813GCN5-related N-acetyltransferase 
15T1E_004447651..48037 [-], 387397692814hypothetical protein 
16T1E_0045 (pitA)48167..49783 [+], 1617397692815phosphate transporter 
17T1E_004649799..50518 [-], 720397692816hypothetical protein  TssL
18T1E_004750583..51920 [-], 1338397692817hypothetical protein  TssK
19T1E_004851970..52767 [-], 798397692818hypothetical protein  TssJ
20T1E_004952764..52967 [-], 204397692819FHA domain-containing protein  Fha
21T1E_005052973..53896 [-], 924397692820hypothetical protein  TssG
22T1E_005153953..55719 [-], 1767397692821hypothetical protein  TssF
23T1E_005255723..56133 [-], 411397692822hypothetical protein  TssE
24T1E_005356130..57617 [-], 1488397692823hypothetical protein  TssC
25T1E_005457635..58138 [-], 504397692824hypothetical protein  TssB
26T1E_005558506..59045 [+], 540397692825hypothetical protein 
27T1E_005659033..60499 [+], 1467397692826hypothetical protein  TssA
28T1E_005760496..64122 [+], 3627397692827hypothetical protein  TssM
29T1E_005864133..64255 [+], 123397692828hypothetical protein 
30T1E_005964256..64771 [-], 516397692829sigma-70, region 4 type 2 
31T1E_006065221..65520 [-], 300397692830hypothetical protein 
32T1E_006165651..66304 [+], 654397692831prophage repressor 
33T1E_006266361..67035 [+], 675397692832prophage repressor 
34T1E_006367119..67694 [-], 576397692833hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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