SecReT6
I. Summary
SecReT6 ID684 insolico
StrainPseudomonas putida DOT-T1E
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018220
Location462045..476972
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1T1E_0403457127..458146 [-], 1020397693173hypothetical protein 
2T1E_0404458139..458324 [-], 186397693174hypothetical protein 
3T1E_0405458321..459811 [-], 1491397693175hypothetical protein 
4T1E_0406459960..460091 [-], 132397693176hypothetical protein 
5T1E_0407460114..461967 [+], 1854397693177ABC transporter ATP-binding protein  TagT
6T1E_0408462045..465665 [-], 3621397693178ImcF domain-containing protein  TssM
7T1E_0409465662..467125 [-], 1464397693179ImpA domain-containing protein  TssA
8T1E_0410467113..467670 [-], 558397693180hypothetical protein 
9T1E_0411468090..468593 [+], 504397693181hypothetical protein  TssB
10T1E_0412468611..470101 [+], 1491397693182hypothetical protein  TssC
11T1E_0413470098..470508 [+], 411397693183GPW/gp25 family protein  TssE
12T1E_0414470512..472278 [+], 1767397693184hypothetical protein  TssF
13T1E_0415472335..473258 [+], 924397693185hypothetical protein  TssG
14T1E_0416473255..473824 [+], 570397693186FHA domain-containing protein  Fha
15T1E_0417473821..474618 [+], 798397693187hypothetical protein  TssJ
16T1E_0418474674..476011 [+], 1338397693188hypothetical protein  TssK
17T1E_0419476013..476972 [+], 960397693189hypothetical protein  TssL
18T1E_0420 (lgrC)476686..479157 [-], 2472397693190amino acid adenylation domain-containing protein 
19T1E_0421479406..480602 [+], 1197397693191peptidase 
20T1E_0422480599..481141 [+], 543397693192hypothetical protein 
21T1E_0423481169..481918 [-], 750397693193hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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