SecReT6
I. Summary
SecReT6 ID685 insolico
StrainPseudomonas putida DOT-T1E
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018220
Location2682360..2702247
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1T1E_24442677944..2679593 [-], 1650397695202major facilitator transporter 
2T1E_24452679676..2682192 [-], 2517397695203UvrABC system protein A 
3T1E_24462682360..2683445 [-], 1086397695204hypothetical protein  TssA
4T1E_24472683541..2684059 [-], 519397695205hypothetical protein  TssD
5T1E_2448 (ompA)2684203..2686698 [-], 2496397695206OmpA domain-containing protein  TssM
6T1E_24492686695..2687603 [-], 909397695207hypothetical protein 
7T1E_24502687600..2691403 [-], 3804397695208ImcF domain-containing protein  TssM
8T1E_24512691434..2692150 [-], 717397695209hypothetical protein  TssL
9T1E_24522692147..2693490 [-], 1344397695210hypothetical protein  TssK
10T1E_24532693487..2694209 [-], 723397695211hypothetical protein  TssJ
11T1E_2454 (clpB5)2694234..2696831 [-], 2598397695212Chaperone protein clpB  TssH
12T1E_24552696828..2697814 [-], 987397695213hypothetical protein  TssG
13T1E_24562697862..2699682 [-], 1821397695214hypothetical protein  TssF
14T1E_24572699682..2700164 [-], 483397695215hypothetical protein  TssE
15T1E_24582700191..2701693 [-], 1503397695216hypothetical protein  TssC
16T1E_24592701708..2702247 [-], 540397695217hypothetical protein  TssB
17T1E_24602702312..2703061 [-], 750397695218hypothetical protein 
18T1E_24612703880..2704995 [+], 1116397695219ADP-ribosyl 
19T1E_24622705080..2705388 [-], 309397695220hypothetical protein 
20T1E_24632705530..2706039 [-], 510397695221hypothetical protein 
21T1E_24642706078..2706227 [+], 150397695222hypothetical protein 
22T1E_24652706474..2706770 [-], 297397695223hypothetical protein 
23T1E_24662706919..2707050 [-], 132397695224hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Psyr_4965 , ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1T1E_24472683541..2684059 [-], 519397695205hypothetical protein Psyr_4965
2T1E_2490(hcpC)2732940..2733368 [+], 429397695246hcp protein ECA2866

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Proteins        Genes
N/A
N/A