SecReT6
I. Summary
SecReT6 ID686 insolico
StrainEnterobacter cloacae subsp. cloacae ENHKU01
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018405
Location2778869..2808413
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECENHK_131002776154..2776594 [-], 441401764090hypothetical protein 
2ECENHK_131052776671..2777747 [-], 1077401764091hypothetical protein 
3ECENHK_131102777751..2778317 [-], 567401764092hypothetical protein 
4ECENHK_131152778382..2778729 [-], 348401764093hypothetical protein 
5ECENHK_131202778869..2780791 [-], 1923401764094hypothetical protein  TssI
6ECENHK_131252780863..2781315 [-], 453401764095hypothetical protein 
7ECENHK_131302781299..2782102 [-], 804401764096hypothetical protein 
8ECENHK_131352782123..2783541 [-], 1419401764097hypothetical protein 
9ECENHK_131402783566..2786181 [-], 2616401764098type VI secretion system protein VasG  TssH
10ECENHK_131452786220..2787263 [-], 1044401764099type VI secretion system protein ImpH  TssG
11ECENHK_131502787260..2789131 [-], 1872401764100type VI secretion system protein ImpG  TssF
12ECENHK_131552789134..2789697 [-], 564401764101hypothetical protein  TssE
13ECENHK_131602789690..2790502 [-], 813401764102Virulence protein SciE Type  TagJ
14ECENHK_131652790512..2791504 [-], 993401764103hypothetical protein 
15ECENHK_131702791521..2792318 [-], 798401764104protein serine/threonine phosphatase 
16ECENHK_131752792315..2794015 [-], 1701401764105FHA domain-containing protein  Fha
17ECENHK_131802794158..2794574 [-], 417401764106hypothetical protein 
18ECENHK_131952796139..2796621 [-], 483401764107hypothetical protein  TssD
19ECENHK_132002796801..2797226 [-], 426401764108hypothetical protein 
20ECENHK_132052797223..2797729 [-], 507401764109hypothetical protein 
21ECENHK_132102797795..2799294 [-], 1500401764110type VI secretion system protein ImpC  TssC
22ECENHK_132152799298..2799822 [-], 525401764111hypothetical protein  TssB
23ECENHK_132202799898..2800914 [-], 1017401764112hypothetical protein  TssA
24ECENHK_132252800926..2801642 [-], 717401764113type VI secretion system protein ImpM 
25ECENHK_132302801659..2805279 [-], 3621401764114type VI secretion system protein ImpL  TssM
26ECENHK_132352805282..2806520 [-], 1239401764115hypothetical protein  TssL
27ECENHK_132402806538..2807881 [-], 1344401764116hypothetical protein  TssK
28ECENHK_132452807910..2808413 [-], 504401764117type VI secretion system protein VasD  TssJ
29ECENHK_132502808437..2808931 [-], 495401764118hypothetical protein 
30ECENHK_132552809931..2812219 [+], 2289401764119hypothetical protein 
31ECENHK_132602812242..2813138 [+], 897401764120hydrogen peroxide-inducible genes activator protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECL_03140 , EC042_4529, ECL_01567, SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECENHK_057651258601..1262788 [+], 4188401762657Rhs family protein ECL_03140
2ECENHK_117152510222..2510704 [+], 483401763821Hcp family type VI secretion system effector EC042_4529
3ECENHK_130952771675..2776150 [-], 4476401764089RhsB ECL_01567
4ECENHK_131952796139..2796621 [-], 483401764107hypothetical protein SMA2263

Download FASTA format files
Proteins        Genes
N/A
N/A