SecReT6
I. Summary
SecReT6 ID687 insolico
StrainEnterobacter cloacae subsp. cloacae ENHKU01
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018405
Location3365820..3396445
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECENHK_157553361645..3361929 [-], 285401764609hypothetical protein 
2ECENHK_157603362302..3363585 [+], 1284401764610long-chain fatty acid outer membrane transporter 
3ECENHK_157653363630..3364382 [-], 753401764611ABC transporter outer membrane lipoprotein 
4ECENHK_157703364698..3365627 [+], 930401764612transporter 
5ECENHK_157753365820..3367139 [-], 1320401764613ImpA domain-containing protein  TssA
6ECENHK_157803367236..3367706 [-], 471401764614hypothetical protein 
7ECENHK_157853367721..3368176 [-], 456401764615type VI secretion system lysozyme-like protein  TssE
8ECENHK_157903368176..3368646 [-], 471401764616type VI secretion lipoprotein  TssJ
9ECENHK_157953368699..3369784 [-], 1086401764617type VI secretion protein  TssG
10ECENHK_158003369748..3371502 [-], 1755401764618type VI secretion protein  TssF
11ECENHK_158053371543..3373141 [-], 1599401764619type VI secretion system protein VasJ  TssA
12ECENHK_158103373141..3376596 [-], 3456401764620ImcF domain-containing protein  TssM
13ECENHK_158153376583..3377632 [-], 1050401764621hypothetical protein 
14ECENHK_158203377707..3377964 [-], 258401764622PAAR repeat-containing protein  PAAR
15ECENHK_158253377979..3380432 [-], 2454401764623hypothetical protein 
16ECENHK_158303380420..3380953 [-], 534401764624hypothetical protein 
17ECENHK_158353381135..3381668 [-], 534401764625lipoprotein 
18ECENHK_158403381851..3382384 [-], 534401764626lipoprotein 
19ECENHK_158453382567..3383100 [-], 534401764627hypothetical protein 
20ECENHK_158503383282..3383815 [-], 534401764628lipoprotein 
21ECENHK_158553384145..3384927 [-], 783401764629hypothetical protein 
22ECENHK_158603384931..3387309 [-], 2379401764630Rhs element Vgr protein  TssI
23ECENHK_158653387306..3389960 [-], 2655401764631hypothetical protein  TssH
24ECENHK_158703390129..3390620 [-], 492401764632Hcp1 family type VI secretion system effector  TssD
25ECENHK_158753390625..3392331 [-], 1707401764633OmpA/MotB domain-containing protein  TagL
26ECENHK_158803392328..3393017 [-], 690401764634DotU family type IV/VI secretion system protein  TssL
27ECENHK_158853393014..3394354 [-], 1341401764635type VI secretion protein  TssK
28ECENHK_158903394371..3395915 [-], 1545401764636EvpB family type VI secretion protein  TssC
29ECENHK_158953395948..3396445 [-], 498401764637hypothetical protein  TssB
30ECENHK_159003397217..3398134 [+], 918401764638lipid A biosynthesis palmitoleoyl acyltransferase 
31ECENHK_159053398617..3399855 [-], 1239401764639yfdZ 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529 , Hcp

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECENHK_158703390129..3390620 [-], 492401764632Hcp1 family type VI secretion system effector EC042_4529
2ECENHK_193704134597..4135082 [+], 486401765322Hcp family type VI secretion system effector Hcp

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Proteins        Genes
N/A
N/A