SecReT6
I. Summary
SecReT6 ID689 insolico
StrainBurkholderia cepacia GG4
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_018514
Location1123167..1145345
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1GEM_42021121886..1123151 [-], 1266402568942hypothetical protein 
2GEM_42031123167..1125371 [-], 2205402568943Rhs element Vgr protein  TssI
3GEM_42041125368..1128034 [-], 2667402568944ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
4GEM_42051128047..1129156 [-], 1110402568945hypothetical protein  TssG
5GEM_42061129153..1131024 [-], 1872402568946hypothetical protein  TssF
6GEM_42071131029..1131577 [-], 549402568947hypothetical protein  TssE
7GEM_42081131594..1132085 [-], 492402568948hypothetical protein  TssD
8GEM_42091132157..1133665 [-], 1509402568949hypothetical protein  TssC
9GEM_42101133658..1134197 [-], 540402568950hypothetical protein  TssB
10GEM_42111134258..1135388 [-], 1131402568951ImpA-like protein  TssA
11GEM_42121135375..1137735 [-], 2361402568952serine/threonine protein kinase 
12GEM_42131137802..1138497 [-], 696402568953hypothetical protein 
13GEM_42141138479..1142108 [-], 3630402568954hypothetical protein  TssM
14GEM_42151142110..1143429 [-], 1320402568955hypothetical protein  TssL
15GEM_42161143445..1144833 [-], 1389402568956hypothetical protein  TssK
16GEM_42171144830..1145345 [-], 516402568957hypothetical protein  TssJ
17GEM_42181145977..1146363 [+], 387402568958hypothetical protein 
18GEM_42191146412..1147839 [+], 1428402568959FHA domain-containing protein  Fha
19GEM_42201148139..1149719 [-], 1581402568960aldehyde dehydrogenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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