SecReT6
I. Summary
SecReT6 ID690 insolico
StrainKlebsiella pneumoniae subsp. pneumoniae 1084
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018522
Location2116458..2140918
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001110011
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A79E_19582111742..2112551 [+], 810402780214ABC transport system, periplasmic component 
2A79E_19592112526..2113425 [-], 900402780215LysR family transcriptional regulator YbhD 
3A79E_19602113535..2114017 [-], 483402780216cold-shock protein 
4A79E_19612114208..2114906 [+], 699402780217ribosomal large subunit pseudouridine synthase A 
5A79E_19622114932..2115471 [-], 540402780218nucleoprotein/polynucleotide-associated enzyme 
6A79E_19632115586..2115915 [-], 330402780219hypothetical protein 
7A79E_19642116086..2116247 [+], 162402780220hypothetical protein 
8A79E_19652116458..2117828 [+], 1371402780221hypothetical protein  TssK
9A79E_19662117825..2118478 [+], 654402780222transmembrane protein  TssL
10A79E_19672118482..2120179 [+], 1698402780223outer membrane protein  TagL
11A79E_19682120638..2123124 [+], 2487402780224VgrG protein  TssI
12A79E_19692123143..2123679 [+], 537402780225hypothetical protein 
13A79E_19702124253..2125401 [+], 1149402780226hypothetical protein 
14A79E_19712125423..2125776 [+], 354402780227serine/threonine kinase 
15A79E_19722126354..2126473 [+], 120402780228hypothetical protein 
16A79E_19732126495..2127388 [+], 894402780229serine/threonine kinase 
17A79E_19742127714..2128457 [+], 744402780230sulfatase modifying factor 1 -like protein 
18A79E_19762128500..2128619 [+], 120402780231hypothetical protein 
19A79E_19772128971..2129534 [+], 564402780232serine/threonine kinase 
20A79E_19782129651..2129767 [+], 117402780233hypothetical protein 
21A79E_19792129810..2130034 [+], 225402780234hypothetical protein 
22A79E_19802130031..2130189 [+], 159402780235hypothetical protein 
23A79E_19812130756..2131022 [+], 267402780236hypothetical protein  PAAR
24A79E_19822131026..2132183 [+], 1158402780237hypothetical protein 
25A79E_19832132167..2135577 [+], 3411402780238hypothetical protein  TssM
26A79E_19842135711..2137474 [+], 1764402780239protein ImpG/VasA  TssF
27A79E_19852137429..2138520 [+], 1092402780240hypothetical protein  TssG
28A79E_19862138549..2139037 [+], 489402780241hypothetical protein  TssJ
29A79E_19872139040..2139483 [+], 444402780242hypothetical protein  TssE
30A79E_19882139503..2140918 [+], 1416402780243hypothetical protein  TssA
31A79E_19892141050..2141964 [+], 915402780244ribose ABC transport system, periplasmic ribose-binding protein RbsB 
32A79E_19902142048..2142377 [+], 330402780245hypothetical protein 
33A79E_19912142459..2143550 [-], 1092402780246GTP-binding and nucleic acid-binding protein YchF 
34A79E_19922143668..2144252 [-], 585402780247peptidyl-tRNA hydrolase 
35A79E_19932144525..2144800 [+], 276402780248hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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