SecReT6
I. Summary
SecReT6 ID691 insolico
StrainKlebsiella pneumoniae subsp. pneumoniae 1084
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018522
Location2973735..3003434
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111101
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A79E_28122969613..2969819 [+], 207402781061hypothetical protein 
2A79E_28132969870..2970748 [-], 879402781062AraC family transcriptional regulator 
3A79E_28142970907..2971662 [+], 756402781063short chain dehydrogenase 
4A79E_28152971667..2972260 [-], 594402781064HTH-type transcriptional regulator YjgJ, TetR family 
5A79E_28162972334..2973047 [+], 714402781065oxidoreductase YjgI 
6A79E_28172973114..2973608 [-], 495402781066hypothetical protein 
7A79E_28182973638..2973757 [+], 120402781067hypothetical protein 
8A79E_28192973735..2974277 [-], 543402781068hypothetical protein  TssJ
9A79E_28202974255..2975340 [-], 1086402781069hypothetical protein  TssG
10A79E_28212975304..2977058 [-], 1755402781070protein ImpG/VasA  TssF
11A79E_28222977599..2978654 [-], 1056402781071hypothetical protein  PAAR
12A79E_28232978685..2980283 [-], 1599402781072hypothetical protein  TssA
13A79E_28242980283..2983786 [-], 3504402781073hypothetical protein  TssM
14A79E_28252985370..2985507 [-], 138402781074hypothetical protein 
15A79E_28262986211..2987281 [-], 1071402781075chitinase, class I 
16A79E_28272987268..2987972 [-], 705402781076transposase 
17A79E_28282988113..2988238 [-], 126402781077transposase 
18A79E_28292988276..2988401 [-], 126402781078transposase 
19A79E_28302989151..2990989 [-], 1839402781079LysM domain-containing protein 
20A79E_28312991007..2991201 [-], 195402781080hypothetical protein 
21A79E_28322991421..2994111 [-], 2691402781081VgrG protein  TssI
22A79E_28332994113..2996767 [-], 2655402781082ClpB protein  TssH
23A79E_28342996858..2997067 [+], 210402781083hypothetical protein 
24A79E_28352997031..2997522 [-], 492402781084cytoplasmic protein USSDB7A  TssD
25A79E_28362997527..2999233 [-], 1707402781085outer membrane protein  TagL
26A79E_28372999230..2999919 [-], 690402781086hypothetical protein  TssL
27A79E_28382999916..3001259 [-], 1344402781087hypothetical protein  TssK
28A79E_28393001269..3002813 [-], 1545402781088hypothetical protein  TssC
29A79E_28403002856..3003434 [-], 579402781089hypothetical protein  TssB
30A79E_28413003988..3004554 [+], 567402781090thiJ/PfpI family protein 
31A79E_28423004753..3006285 [-], 1533402781091deoxyguanosinetriphosphate triphosphohydrolase 
32A79E_28433006502..3007236 [-], 735402781092short-chain type dehydrogenase/reductase 
33A79E_28443007333..3008286 [+], 954402781093LysR family transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1A79E_28352997031..2997522 [-], 492402781084cytoplasmic protein USSDB7A EC042_4529

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Proteins        Genes
N/A
N/A