SecReT6
I. Summary
SecReT6 ID692 insolico
StrainPectobacterium carotovorum subsp. carotovorum PCC21
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018525
Location3645985..3671077
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PCC21_0322003641039..3641956 [-], 918403059659hypothetical protein 
2PCC21_0322103641953..3642909 [-], 957403059660hypothetical protein 
3PCC21_0322203643062..3643760 [-], 699403059661lipoprotein 
4PCC21_0322303643826..3644524 [-], 699403059662lipoprotein 
5PCC21_0322403644605..3645975 [-], 1371403059663phospholipase  PAAR
6PCC21_0322503645985..3648021 [-], 2037403059664ImpA family type VI secretion-associated protein  TssI
7PCC21_0322603648218..3648736 [-], 519403059665type VI secretion system effector  TssD
8PCC21_0322703649355..3650710 [-], 1356403059666lipoprotein 
9PCC21_0322803650739..3652175 [-], 1437403059667ImpA domain-containing protein  TssA
10PCC21_0322903652224..3655721 [-], 3498403059668IcmF-like protein  TssM
11PCC21_0323003655746..3657170 [-], 1425403059669type VI secretion-associated protein  TssA
12PCC21_0323103657182..3657742 [-], 561403059670hypothetical protein 
13PCC21_0323203657742..3659280 [-], 1539403059671sigma-54 interacting domain-containing protein 
14PCC21_0323303659283..3661880 [-], 2598403059672type VI secretion ATPase, ClpV1 family  TssH
15PCC21_0323403661894..3662670 [-], 777403059673hypothetical protein  TssL
16PCC21_0323503662686..3664023 [-], 1338403059674hypothetical protein  TssK
17PCC21_0323603664026..3664547 [-], 522403059675lipoprotein  TssJ
18PCC21_0323703664547..3665767 [-], 1221403059676FHA domain-containing protein  Fha
19PCC21_0323803665770..3666768 [-], 999403059677hypothetical protein  TssG
20PCC21_0323903666732..3668498 [-], 1767403059678hypothetical protein  TssF
21PCC21_0324003668501..3668932 [-], 432403059679hypothetical protein  TssE
22PCC21_0324103668938..3670416 [-], 1479403059680hypothetical protein  TssC
23PCC21_0324203670574..3671077 [-], 504403059681hypothetical protein  TssB
24PCC21_0324303672187..3672570 [-], 384403059682purine ribonucleoside efflux pump NepI 
25PCC21_0324403672854..3673015 [-], 162403059683hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA0456 , ECA3427, ECA2866, ECA3427, ECA2866, ECA3427

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PCC21_004700523320..523799 [-], 480403056909hypothetical protein ECA0456
2PCC21_0322503645985..3648021 [-], 2037403059664ImpA family type VI secretion-associated protein ECA3427
3PCC21_0322603648218..3648736 [-], 519403059665type VI secretion system effector ECA2866
4PCC21_0330203748321..3750348 [-], 2028403059741vgrG protein ECA3427
5PCC21_0413904701775..4702293 [+], 519403060578type VI secretion system effector ECA2866
6PCC21_0414004702384..4704243 [+], 1860403060579hypothetical protein ECA3427

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Proteins        Genes
N/A
N/A