SecReT6
I. Summary
SecReT6 ID694 insolico
StrainBurkholderia pseudomallei BPC006
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_018529
Location88359..145811
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112201111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BPC006_II009683687..83821 [+], 135403521390hypothetical protein 
2BPC006_II009784084..84179 [+], 96403521391hypothetical protein 
3BPC006_II009884850..85221 [+], 372403521392putrescine transport system permease PotH 
4BPC006_II009985481..85630 [-], 150403521393hypothetical protein 
5BPC006_II010085834..85938 [-], 105403521394hypothetical protein 
6BPC006_II010186080..87090 [+], 1011403521395ABC transport system, exported substrate-binding protein 
7BPC006_II010288359..91139 [+], 2781403521396Rhs element Vgr protein  TssI
8BPC006_II010391153..93393 [+], 2241403521397Type V secretory pathway, adhesin AidA  BTH_II0090 (e)
9BPC006_II010493412..95070 [+], 1659403521398hypothetical protein 
10BPC006_II010595080..95343 [+], 264403521399PAAR motif-containing protein  PAAR
11BPC006_II010695494..95778 [+], 285403521400hypothetical protein 
12BPC006_II010795758..96177 [-], 420403521401hypothetical protein 
13BPC006_II010896197..96523 [-], 327403521402thioredoxin 
14BPC006_II010996699..96983 [+], 285403521403hypothetical protein 
15BPC006_II011096995..97687 [+], 693403521404lipoprotein 
16BPC006_II011198080..98268 [-], 189403521405hypothetical protein 
17BPC006_II011298273..99016 [-], 744403521406hypothetical protein 
18BPC006_II011399013..100608 [-], 1596403521407cytochrome c oxidase subunit I 
19BPC006_II0114100738..100845 [+], 108403521408hypothetical protein 
20BPC006_II0115101130..101264 [-], 135403521409hypothetical protein 
21BPC006_II0116101758..103338 [-], 1581403521410hypothetical protein 
22BPC006_II0117103888..103980 [+], 93403521411hypothetical protein 
23BPC006_II0118104503..104628 [+], 126403521412hypothetical protein 
24BPC006_II0119105624..106031 [+], 408403521413hemagluttinin family protein 
25BPC006_II0120106098..107549 [-], 1452403521414PqaA protein 
26BPC006_II0121107621..107836 [+], 216403521415hypothetical protein 
27BPC006_II0122107847..108401 [-], 555403521416outer membrane protein 
28BPC006_II0123109049..109531 [+], 483403521417fimbrial protein 
29BPC006_II0124109653..110333 [+], 681403521418fimbrial assembly chaperone protein 
30BPC006_II0125110431..113190 [+], 2760403521419fimbrial usher protein 
31BPC006_II0126113168..113755 [+], 588403521420major fimbrial subunit protein 
32BPC006_II0127113787..114476 [+], 690403521421hypothetical protein  TssL
33BPC006_II0128114527..116155 [+], 1629403521422OmpA family protein  TagL
34BPC006_II0129116295..116387 [+], 93403521423hypothetical protein 
35BPC006_II0130116545..117084 [+], 540403521424hypothetical protein  TssB
36BPC006_II0131117118..118617 [+], 1500403521425hypothetical protein  TssC
37BPC006_II0132118817..119299 [+], 483403521426SciM protein  TssD
38BPC006_II0133119337..119969 [+], 633403521427SciN protein  TssJ
39BPC006_II0134119966..121324 [+], 1359403521428hypothetical protein  TssK
40BPC006_II0135121321..122622 [+], 1302403521429hypothetical protein  TssL
41BPC006_II0136122637..126545 [+], 3909403521430ImcF/SciS family protein  TssM
42BPC006_II0137126576..126698 [+], 123403521431hypothetical protein 
43BPC006_II0138126735..127304 [+], 570403521432hypothetical protein 
44BPC006_II0139127450..130092 [+], 2643403521433Rhs element Vgr protein  TssI
45BPC006_II0140130188..130436 [+], 249403521434PAAR motif-containing protein  PAAR
46BPC006_II0141130529..133954 [+], 3426403521435YD repeat-/RHS repeat-containing protein 
47BPC006_II0142135238..136266 [-], 1029403521436hypothetical protein 
48BPC006_II0144137410..138459 [-], 1050403521437hypothetical protein  TssG
49BPC006_II0145138456..140336 [-], 1881403521438hypothetical protein  TssF
50BPC006_II0146140338..140856 [-], 519403521439hypothetical protein  TssE
51BPC006_II0147140843..141649 [-], 807403521440ImpE/SciE family protein  TagJ
52BPC006_II0148141681..142736 [-], 1056403521441hypothetical protein 
53BPC006_II0149142742..142891 [+], 150403521442hypothetical protein 
54BPC006_II0150143082..145811 [+], 2730403521443chaperone clpB  TssH
55BPC006_II0151146074..146193 [+], 120403521444hypothetical protein 
56BPC006_II0152146202..149300 [-], 3099403521445response regulator/sensor histidine kinase 
57BPC006_II0153150031..150147 [-], 117403521446hypothetical protein 
58BPC006_II0154150504..150596 [+], 93403521447hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A