SecReT6
I. Summary
SecReT6 ID695 insolico
StrainBurkholderia pseudomallei BPC006
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_018529
Location220065..242493
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BPC006_II0221215661..216656 [+], 996403521514zinc-binding dehydrogenase family oxidoreductase 
2BPC006_II0222216711..217637 [+], 927403521515aromatic ring-opening dioxygenase 
3BPC006_II0223217881..219227 [-], 1347403521516LysR family transcriptional regulator 
4BPC006_II0224219812..220045 [-], 234403521517hypothetical protein 
5BPC006_II0225220065..224141 [-], 4077403521518ImcF/SciS family protein  TssM
6BPC006_II0226224170..225435 [-], 1266403521519hypothetical protein  TssL
7BPC006_II0227225524..226870 [-], 1347403521520hypothetical protein  TssK
8BPC006_II0228226892..227395 [-], 504403521521SciN protein  TssJ
9BPC006_II0229227502..227987 [-], 486403521522SciM protein  TssD
10BPC006_II0230228104..229603 [-], 1500403521523hypothetical protein  TssC
11BPC006_II0231229638..230219 [-], 582403521524hypothetical protein  TssB
12BPC006_II0232230255..233194 [-], 2940403521525chaperone clpB  TssH
13BPC006_II0233233726..234448 [+], 723403521526hypothetical protein 
14BPC006_II0234234445..235410 [+], 966403521527ImpE/SciE family protein  TagJ
15BPC006_II0235235397..235978 [+], 582403521528hypothetical protein  TssE
16BPC006_II0236236008..237897 [+], 1890403521529hypothetical protein  TssF
17BPC006_II0237237897..238982 [+], 1086403521530hypothetical protein  TssG
18BPC006_II0239240166..242493 [+], 2328403521531Rhs element Vgr protein  TssI
19BPC006_II0240242525..245002 [+], 2478403521532pentapeptide repeat-containing protein 
20BPC006_II0241244999..246081 [+], 1083403521533pentapeptide repeat-containing protein 
21BPC006_II0242246036..246266 [+], 231403521534hypothetical protein 
22BPC006_II0243246263..246922 [+], 660403521535hypothetical protein 
23BPC006_II0244246963..247343 [+], 381403521536hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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