SecReT6
I. Summary
SecReT6 ID696 insolico
StrainBurkholderia pseudomallei BPC006
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_018529
Location739446..764803
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111201111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BPC006_II0740735248..736762 [+], 1515403522026acetyl-CoA hydrolase/transferase family protein 
2BPC006_II0741736892..736987 [+], 96403522027hypothetical protein 
3BPC006_II0742737832..737990 [+], 159403522028hypothetical protein 
4BPC006_II0744739446..740003 [+], 558403522029hypothetical protein  TssB
5BPC006_II0745740006..741511 [+], 1506403522030hypothetical protein  TssC
6BPC006_II0746741655..742182 [+], 528403522031hypothetical protein  TssD
7BPC006_II0747742262..742693 [+], 432403522032hypothetical protein  TssE
8BPC006_II0748742707..744569 [+], 1863403522033hypothetical protein  TssF
9BPC006_II0749744566..745555 [+], 990403522034hypothetical protein  TssG
10BPC006_II0750745558..748428 [+], 2871403522035ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
11BPC006_II0751748464..750710 [+], 2247403522036Rhs element Vgr protein  TssI
12BPC006_II0752750876..753164 [+], 2289403522037Rhs element Vgr protein  TssI
13BPC006_II0753753198..755384 [+], 2187403522038hypothetical protein 
14BPC006_II0754755381..756454 [+], 1074403522039hypothetical protein 
15BPC006_II0755756463..757173 [+], 711403522040hypothetical protein 
16BPC006_II0756757243..757605 [+], 363403522041hypothetical protein 
17BPC006_II0757757611..758204 [+], 594403522042lipoprotein  TssJ
18BPC006_II0758758243..759562 [+], 1320403522043hypothetical protein  TssK
19BPC006_II0759759588..761303 [+], 1716403522044hypothetical protein  TssL
20BPC006_II0760761300..764803 [+], 3504403522045hypothetical protein  TssM
21BPC006_II0761764764..764865 [+], 102403522046hypothetical protein 
22BPC006_II0762764862..765221 [+], 360403522047hypothetical protein 
23BPC006_II0763765244..765669 [+], 426403522048hypothetical protein 
24BPC006_II0764765869..765991 [-], 123403522049hypothetical protein 
25BPC006_II0765765990..766265 [+], 276403522050hypothetical protein 
26BPC006_II0766766302..766442 [+], 141403522051hypothetical protein 
27BPC006_II0767766780..766878 [-], 99403522052hypothetical protein 
28BPC006_II0768766879..767715 [+], 837403522053rhamnosyltransferase I, subunit A 
29BPC006_II0769767757..768038 [-], 282403522054hypothetical protein 
30BPC006_II0770768042..769268 [+], 1227403522055rhamnosyltransferase I, subunit B 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BPC006_II0746741655..742182 [+], 528403522031hypothetical protein YPK_3563

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Proteins        Genes
N/A
N/A