SecReT6
I. Summary
SecReT6 ID698 insolico
StrainBurkholderia pseudomallei BPC006
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_018529
Location2799866..2845545
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111201111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BPC006_II27722798582..2799850 [-], 1269403524050hypothetical protein 
2BPC006_II27732799866..2802070 [-], 2205403524051Rhs element Vgr protein  TssI
3BPC006_II27742802038..2802253 [+], 216403524052hypothetical protein 
4BPC006_II27752803527..2804015 [-], 489403524053transposase 
5BPC006_II27762804045..2804392 [-], 348403524054TnpB protein 
6BPC006_II27772804389..2804664 [-], 276403524055transposase 
7BPC006_II27782805229..2807262 [-], 2034403524056hypothetical protein 
8BPC006_II27792807315..2807410 [+], 96403524057hypothetical protein 
9BPC006_II27802807503..2809812 [-], 2310403524058alpha-galactosidase 
10BPC006_II27812810531..2811334 [-], 804403524059carbohydrate ABC transporter, permease protein 
11BPC006_II27822811517..2812716 [-], 1200403524060carbohydrate ABC transporter periplasmic binding protein 
12BPC006_II27832812794..2812898 [-], 105403524061carbohydrate ABC transporter ATP-binding protein 
13BPC006_II27842813457..2813570 [+], 114403524062hypothetical protein 
14BPC006_II27852814081..2815946 [-], 1866403524063hypothetical protein 
15BPC006_II27862816492..2817166 [-], 675403524064LacI family transcriptional regulator 
16BPC006_II27872817954..2818211 [+], 258403524065transposase 
17BPC006_II27882818988..2819728 [+], 741403524066hypothetical protein 
18BPC006_II27892820460..2821719 [-], 1260403524067substrate-binding repeat-containing protein 
19BPC006_II27902821679..2822347 [-], 669403524068hypothetical protein 
20BPC006_II27912822405..2824600 [-], 2196403524069Rhs element Vgr protein  TssI
21BPC006_II27922824606..2827272 [-], 2667403524070ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
22BPC006_II27932827285..2828730 [-], 1446403524071hypothetical protein  TssG
23BPC006_II27942828727..2830598 [-], 1872403524072hypothetical protein  TssF
24BPC006_II27952830603..2831151 [-], 549403524073hypothetical protein  TssE
25BPC006_II27962831170..2831661 [-], 492403524074hypothetical protein  TssD
26BPC006_II27972831721..2833229 [-], 1509403524075hypothetical protein  TssC
27BPC006_II27982833222..2833800 [-], 579403524076hypothetical protein  TssB
28BPC006_II28002834995..2837580 [-], 2586403524077protein kinase 
29BPC006_II28012837579..2837806 [+], 228403524078hypothetical protein 
30BPC006_II28022837791..2838750 [-], 960403524079hypothetical protein 
31BPC006_II28032838747..2842376 [-], 3630403524080ImcF-related protein  TssM
32BPC006_II28042842379..2843695 [-], 1317403524081hypothetical protein  TssL
33BPC006_II28052843711..2845114 [-], 1404403524082hypothetical protein  TssK
34BPC006_II28062845111..2845545 [-], 435403524083lipoprotein  TssJ
35BPC006_II28072846137..2846670 [+], 534403524084lipoprotein 
36BPC006_II28082846725..2848161 [+], 1437403524085FHA domain-containing protein  Fha
37BPC006_II28092848205..2850109 [-], 1905403524086hypothetical protein 
38BPC006_II28102850128..2850313 [+], 186403524087hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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