SecReT6
I. Summary
SecReT6 ID7 insolico
StrainMesorhizobium loti MAFF303099
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_002678
Location1876685..1921952
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1mll23231872981..1874147 [-], 116713472126hypothetical protein 
2mll23251874204..1874971 [-], 76813472127transcriptional regulator 
3mlr23261875198..1876607 [+], 141013472128sugar binding protein of sugar ABC transporter 
4mlr23271876685..1877644 [+], 96013472129sugar ABC transporter permease 
5mlr23281877641..1878531 [+], 89113472130sugar ABC transporter permease 
6mlr23291878542..1879639 [+], 109813472131sugar ABC transporter ATP-binding protein 
7mlr23301879666..1880829 [+], 116413472132hypothetical protein 
8mlr23321880853..1881602 [+], 75013472133hypothetical protein 
9mll23331881611..1882051 [-], 44113472134hypothetical protein 
10msr23341882032..1882193 [+], 16213472135hypothetical protein 
11mll23351882260..1885097 [-], 283813472136ClpA/B-type protease  TssH
12mlr23361885421..1886596 [+], 117613472137hypothetical protein  TssA
13mlr23371886602..1887138 [+], 53713472138hypothetical protein  TssB
14mlr23381887142..1888647 [+], 150613472139hypothetical protein  TssC
15mlr23391888697..1889179 [+], 48313472140hypothetical protein  TssD
16mlr23411889166..1889918 [+], 75313472141hypothetical protein  TssE
17mlr23421889920..1891794 [+], 187513472142hypothetical protein  TssF
18mlr23431891758..1892825 [+], 106813472143hypothetical protein  TssG
19mlr23451892822..1894282 [+], 146113472144hypothetical protein  Fha
20mlr23461894286..1894738 [+], 45313472145hypothetical protein  TssJ
21mlr23471894779..1896113 [+], 133513472146hypothetical protein  TssK
22mlr23481896118..1897446 [+], 132913472147hypothetical protein  TssL
23mlr23491897448..1900990 [+], 354313472148hypothetical protein  TssM
24mlr23501900972..1901514 [+], 54313472149hypothetical protein 
25mlr23511901514..1902617 [+], 110413472150hypothetical protein 
26mlr23521902614..1903657 [+], 1044134721513-oxoacyl-ACP synthase 
27mlr23531903654..1904703 [+], 105013472152hypothetical protein 
28mlr23541904700..1905761 [+], 106213472153hypothetical protein 
29mll23551905788..1906126 [-], 33913472154hypothetical protein 
30mll23561906126..1906548 [-], 42313472155hypothetical protein 
31mll23571906557..1908884 [-], 232813472156hypothetical protein  TssI
32mlr23581909132..1910211 [+], 108013472157hypothetical protein  Fha
33mlr23591910475..1911989 [+], 151513472158hypothetical protein  TssL
34mlr23601911989..1915519 [+], 353113472159hypothetical protein  TssM
35mlr23611915592..1916434 [+], 84313472160phosphoprotein phosphatase 
36mlr23631916431..1919004 [+], 257413472161serine/threonine kinase 
37mlr23641919017..1919517 [+], 50113472162hypothetical protein 
38mlr23651919514..1921952 [+], 243913472163hypothetical protein 
39mlr23661922263..1923591 [+], 132913472164hypothetical protein 
40mll23681923670..1924173 [-], 50413472165hypothetical protein  TagL
41mlr23701924376..1924921 [+], 54613472166hypothetical protein 
42mll23721924975..1926141 [-], 116713472167hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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