SecReT6
I. Summary
SecReT6 ID701 insolico
StrainEscherichia coli O104:H4 str. 2011C-3493
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018658
Location877798..906153
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101112211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1O3K_04245873428..873640 [+], 213407480430hemolysin expression-modulating protein 
2O3K_04250874257..874826 [+], 570407480431hypothetical protein 
3O3K_04255874994..875377 [+], 384407480432hypothetical protein 
4O3K_04260875367..875786 [+], 420407480433hypothetical protein 
5O3K_04265875792..875974 [+], 183407480434hypothetical protein 
6O3K_04270876095..876718 [+], 624407480435hypothetical protein 
7O3K_04275876814..877047 [+], 234407480436hypothetical protein 
8O3K_04280877100..877291 [-], 192407480437hypothetical protein 
9O3K_04285877798..878295 [+], 498407480438hypothetical protein  TssB
10O3K_04290878317..879678 [+], 1362407480439hypothetical protein  TssC
11O3K_04295879780..881024 [+], 1245407480440hypothetical protein 
12O3K_04300881341..883005 [+], 1665407480441UvrD/REP helicase 
13O3K_04305883067..883375 [+], 309407480442hypothetical protein 
14O3K_04310883430..883657 [+], 228407480443transcriptional regulator IbrB 
15O3K_04315883736..884005 [+], 270407480444transcriptional regulator 
16O3K_04320884026..884670 [+], 645407480445hypothetical protein 
17O3K_04325884736..885059 [+], 324407480446hypothetical protein 
18O3K_04330885113..885508 [-], 396407480447hypothetical protein 
19O3K_04340885942..886265 [+], 324407480448hypothetical protein 
20O3K_04355887786..888262 [+], 477407480449hypothetical protein  TssB
21O3K_04360888265..889743 [+], 1479407480450hypothetical protein  TssC
22O3K_04365889765..890259 [+], 495407480451hypothetical protein  AaiC (e)
23O3K_04370890269..890691 [+], 423407480452hypothetical protein  TssE
24O3K_04375890727..891023 [-], 297407480453hypothetical protein 
25O3K_04380891155..892486 [+], 1332407480454hypothetical protein  TssF
26O3K_04385892477..893409 [+], 933407480455hypothetical protein  TssG
27O3K_04390893422..895404 [+], 1983407480456hypothetical protein  TssI
28O3K_04395895415..895882 [+], 468407480457hypothetical protein 
29O3K_04400895886..896191 [+], 306407480458hypothetical protein  PAAR
30O3K_04405896195..897271 [+], 1077407480459hypothetical protein  TssA
31O3K_04410897279..897830 [+], 552407480460hypothetical protein  TssJ
32O3K_04415897849..899261 [+], 1413407480461hypothetical protein  TssK
33O3K_04420899289..899603 [+], 315407480462hypothetical protein 
34O3K_04425899600..900190 [+], 591407480463hypothetical protein  TssL
35O3K_04430900187..903600 [+], 3414407480464hypothetical protein  TssM
36O3K_04435903604..906153 [+], 2550407480465hypothetical protein  TssH
37O3K_04455909444..909830 [+], 387407480466transposase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4564

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1O3K_04365889765..890259 [+], 495407480451hypothetical protein EC042_4564

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Proteins        Genes
N/A
N/A