I. Summary
SecReT6 ID703 insolico
StrainEscherichia coli O104:H4 str. 2009EL-2071
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1O3O_21405866953..867165 [+], 213407470914hemolysin expression-modulating protein 
2O3O_21400867782..868351 [+], 570407470913hypothetical protein 
3O3O_21395868519..868902 [+], 384407470912hypothetical protein 
4O3O_21390868892..869311 [+], 420407470911hypothetical protein 
5O3O_21385869317..869499 [+], 183407470910hypothetical protein 
6O3O_21380869620..870243 [+], 624407470909hypothetical protein 
7O3O_21375870339..870572 [+], 234407470908hypothetical protein 
8O3O_21370870625..870816 [-], 192407470907hypothetical protein 
9O3O_21365871323..871820 [+], 498407470906hypothetical protein  TssB
10O3O_21360871842..873203 [+], 1362407470905hypothetical protein  TssC
11O3O_21355873305..874549 [+], 1245407470904hypothetical protein 
12O3O_21350874866..876530 [+], 1665407470903UvrD/REP helicase 
13O3O_21345876592..876900 [+], 309407470902hypothetical protein 
14O3O_21340876955..877182 [+], 228407470901transcriptional regulator IbrB 
15O3O_21335877261..877530 [+], 270407470900transcriptional regulator 
16O3O_21330877551..878195 [+], 645407470899hypothetical protein 
17O3O_21325878261..878584 [+], 324407470898hypothetical protein 
18O3O_21320878638..879033 [-], 396407470897hypothetical protein 
19O3O_21310879404..879790 [+], 387407470896hypothetical protein 
20O3O_21290881311..881787 [+], 477407470895hypothetical protein  TssB
21O3O_21285881790..883268 [+], 1479407470894hypothetical protein  TssC
22O3O_21280883278..883784 [+], 507407470893hypothetical protein  AaiC (e)
23O3O_21275883794..884216 [+], 423407470892hypothetical protein  TssE
24O3O_21270884252..884548 [-], 297407470891hypothetical protein 
25O3O_21265884680..886011 [+], 1332407470890hypothetical protein  TssF
26O3O_21260886002..886934 [+], 933407470889hypothetical protein  TssG
27O3O_21255886947..888929 [+], 1983407470888hypothetical protein  TssI
28O3O_21250888940..889407 [+], 468407470887hypothetical protein 
29O3O_21245889411..889716 [+], 306407470886hypothetical protein  PAAR
30O3O_21240889720..890796 [+], 1077407470885hypothetical protein  TssA
31O3O_21235890804..891355 [+], 552407470884hypothetical protein  TssJ
32O3O_21230891374..892786 [+], 1413407470883hypothetical protein  TssK
33O3O_21225892814..893128 [+], 315407470882hypothetical protein 
34O3O_21220893125..893715 [+], 591407470881hypothetical protein  TssL
35O3O_21215893712..897125 [+], 3414407470880hypothetical protein  TssM
36O3O_21210897129..899678 [+], 2550407470879hypothetical protein  TssH
37O3O_21200900700..901086 [+], 387407470878ORF2 transposase 
38O3O_21195902844..903410 [+], 567407470877hypothetical protein 
39O3O_21190903555..903788 [-], 234407470876hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1O3O_21280883278..883784 [+], 507407470893hypothetical protein EC042_4564

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Proteins        Genes