SecReT6
I. Summary
SecReT6 ID705 insolico
StrainBurkholderia phenoliruptrix BR3459a
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_018672
Location2332654..2352592
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BUPH_061312328684..2329316 [+], 633407710741hypothetical protein 
2BUPH_065002329466..2329729 [+], 264407710742hypothetical protein 
3BUPH_061292329861..2330793 [+], 933407710743ornithine cyclodeaminase 
4BUPH_061282331084..2332565 [+], 1482407710744glucose-6-phosphate 1-dehydrogenase 
5BUPH_061272332654..2333433 [-], 780407710745type VI secretion system protein ImpK  TssL
6BUPH_061262333430..2334776 [-], 1347407710746type VI secretion system protein ImpJ  TssK
7BUPH_061252334885..2335511 [-], 627407710747type VI secretion system protein VasD  TssJ
8BUPH_061242335931..2336581 [+], 651407710748hypothetical protein 
9BUPH_061232336617..2337144 [+], 528407710749type VI secretion system protein ImpB  TssB
10BUPH_061222337159..2338649 [+], 1491407710750type VI secretion system protein ImpC  TssC
11BUPH_061212338723..2339226 [+], 504407710751type VI secretion system secreted protein Hcp  TssD
12BUPH_061202339310..2339789 [+], 480407710752type VI secretion system protein ImpF  TssE
13BUPH_061192339900..2341738 [+], 1839407710753type VI secretion system protein ImpG  TssF
14BUPH_061182341786..2342796 [+], 1011407710754type VI secretion system protein ImpH  TssG
15BUPH_061172342830..2345505 [+], 2676407710755type VI secretion system protein VasG  TssH
16BUPH_061162345541..2346659 [+], 1119407710756type VI secretion system protein ImpA  TssA
17BUPH_06115 (ompA)2346758..2347660 [-], 903407710757Outer membrane protein A  TagL
18BUPH_061142347728..2348720 [-], 993407710758type VI secretion system protein ImpM 
19BUPH_061132348717..2352592 [-], 3876407710759type VI secretion system protein ImpL  TssM
20BUPH_064992352866..2353711 [-], 846407710760Putative metalopeptidase 
21BUPH_061112353837..2354814 [+], 978407710761hypothetical protein 
22BUPH_061102354968..2356104 [+], 1137407710762inosine/uridine-preferring nucleoside hydrolase 
23BUPH_061092356142..2357056 [-], 915407710763LysR family transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BUPH_061212338723..2339226 [+], 504407710751type VI secretion system secreted protein Hcp BCAL0343

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Proteins        Genes
N/A
N/A