SecReT6
I. Summary
SecReT6 ID706 insolico
StrainAlcanivorax dieselolei B5
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018691
Location2393958..2416862
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1B5T_021812389757..2390548 [+], 792407696010D-alanyl-D-alanine carboxypeptidase 
2B5T_021822390729..2392021 [+], 1293407696011Rhs element Vgr protein  PAAR
3B5T_021832392018..2392497 [+], 480407696012hypothetical protein 
4B5T_021842392528..2393949 [+], 1422407696013transmembrane protein 
5B5T_021852393958..2397710 [+], 3753407696014transmembrane protein  TssM
6B5T_021862397703..2398701 [+], 999407696015type VI secretion-associated protein, family 
7B5T_021872398698..2399483 [+], 786407696016outer membrane protein-related peptidoglycan-associated (lipo)protein  TagL
8B5T_021882399503..2400546 [-], 1044407696017protein ImpA  TssA
9B5T_021892400578..2401369 [-], 792407696018transmembrane protein  TssL
10B5T_021902401366..2402712 [-], 1347407696019hypothetical protein  TssK
11B5T_021912402846..2403430 [-], 585407696020transmembrane protein  TssJ
12B5T_021922404019..2404555 [+], 537407696021hypothetical protein 
13B5T_021932404591..2405106 [+], 516407696022hypothetical protein  TssB
14B5T_021942405112..2406602 [+], 1491407696023hypothetical protein  TssC
15B5T_021952406726..2407217 [+], 492407696024Hcp family protein  TssD
16B5T_021962407334..2407843 [+], 510407696025type VI secretion system lysozyme-like protein  TssE
17B5T_021972407846..2409681 [+], 1836407696026type VI secretion protein  TssF
18B5T_021982409645..2410739 [+], 1095407696027quinoprotein dehydrogenase  TssG
19B5T_021992410779..2413481 [+], 2703407696028type VI secretion ATPase, ClpV1 family  TssH
20B5T_022002413478..2413828 [+], 351407696029hypothetical protein 
21B5T_022012413896..2416862 [+], 2967407696030Rhs element Vgr protein  TssI
22B5T_022022417371..2417838 [+], 468407696031hypothetical protein 
23B5T_022032417835..2420672 [+], 2838407696032hypothetical protein 
24B5T_022042421037..2421729 [+], 693407696033hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A