SecReT6
I. Summary
SecReT6 ID707 insolico
StrainBurkholderia phenoliruptrix BR3459a
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_018695
Location1352649..1380393
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BUPH_017301347918..1348727 [+], 810407712923branched-chain amino acid transport system ATP-binding protein 
2BUPH_017311348975..1350225 [+], 1251407712924D-alanyl-D-alanine carboxypeptidase 
3BUPH_017321350266..1350988 [-], 723407712925abortive infection protein 
4BUPH_017331351417..1352448 [+], 1032407712926alpha/beta fold family hydrolase 
5BUPH_017341352649..1353080 [-], 432407712927type VI secretion system protein  TssE
6BUPH_017351353093..1355831 [-], 2739407712928type VI secretion system protein VasG  TssH
7BUPH_017361355929..1356414 [-], 486407712929type VI secretion system secreted protein Hcp  TssD
8BUPH_017371356578..1358221 [-], 1644407712930OmpA/MotB domain-containing protein  TagL
9BUPH_017381358296..1359039 [-], 744407712931type VI secretion system protein ImpK  TssL
10BUPH_017391359036..1360367 [-], 1332407712932type VI secretion system protein ImpJ  TssK
11BUPH_017401361032..1361463 [+], 432407712933type VI secretion system protein ImpB  TssB
12BUPH_017411361536..1363068 [+], 1533407712934type VI secretion system protein ImpC  TssC
13BUPH_017421363152..1365491 [+], 2340407712935rhs element Vgr protein  TssI
14BUPH_017431365498..1368077 [+], 2580407712936chitinase-like protein 
15BUPH_017441370474..1371712 [+], 1239407712937hypothetical protein 
16BUPH_065751371709..1375293 [+], 3585407712938hypothetical protein  TssM
17BUPH_017461375290..1376882 [+], 1593407712939type VI secretion system protein VasJ  TssA
18BUPH_017471376893..1378719 [+], 1827407712940type VI secretion system protein ImpG  TssF
19BUPH_017481378716..1379849 [+], 1134407712941type VI secretion system protein ImpH  TssG
20BUPH_017491379863..1380393 [+], 531407712942type VI secretion system protein VasD  TssJ
21BUPH_017501380607..1381242 [-], 636407712943nitroreductase 
22BUPH_017511381550..1381783 [+], 234407712944MbtH protein 
23BUPH_017521381787..1382680 [+], 894407712945thioesterase 
24BUPH_017531382745..1384187 [+], 1443407712946cupin 
25BUPH_017541384358..1385248 [+], 891407712947hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BUPH_017361355929..1356414 [-], 486407712929type VI secretion system secreted protein Hcp EC042_4529

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Proteins        Genes
N/A
N/A