SecReT6
I. Summary
SecReT6 ID708 insolico
StrainAcinetobacter baumannii TYTH-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018706
Location1760737..1780148
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1M3Q_16611756617..1757498 [-], 882407932341nitrate/sulfonate/bicarbonate ABC transporter ATPase 
2M3Q_16621757498..1758442 [-], 945407932342nitrate/sulfonate/bicarbonate ABC transporter permease 
3M3Q_16631758538..1758939 [-], 402407932343hypothetical protein 
4M3Q_16641760259..1760720 [+], 462407932344signal peptide protein 
5M3Q_16651760737..1761240 [+], 504407932345hypothetical protein  TssB
6M3Q_16661761233..1762714 [+], 1482407932346hypothetical protein  TssC
7M3Q_16671762764..1763267 [+], 504407932347hypothetical protein  TssD
8M3Q_16681763347..1763823 [+], 477407932348hypothetical protein  TssE
9M3Q_16691764074..1765651 [+], 1578407932349hypothetical protein  TssF
10M3Q_16701765615..1766613 [+], 999407932350hypothetical protein  TssG
11M3Q_16711766610..1768022 [+], 1413407932351hypothetical protein 
12M3Q_16721768053..1771877 [+], 3825407932352hypothetical protein  TssM
13M3Q_16731771879..1772874 [+], 996407932353hypothetical protein 
14M3Q_16741772877..1773644 [+], 768407932354outer membrane lipoprotein  TagL
15M3Q_16751773661..1773924 [+], 264407932355hypothetical protein  PAAR
16M3Q_16761774147..1776825 [+], 2679407932356chaperone ATPase  TssH
17M3Q_16771776849..1777943 [+], 1095407932357hypothetical protein  TssA
18M3Q_16781777960..1779324 [+], 1365407932358hypothetical protein  TssK
19M3Q_16791779342..1780148 [+], 807407932359hypothetical protein  TssL
20M3Q_16801780161..1780763 [+], 603407932360hypothetical protein 
21M3Q_16811780771..1781724 [+], 954407932361hypothetical protein 
22M3Q_16821781727..1782578 [-], 852407932362transcriptional regulator 
23M3Q_16831782730..1783398 [+], 669407932363ankyrin repeat-containing protein 
24M3Q_16841783666..1783896 [+], 231407932364guanine deaminase 
25M3Q_16851783896..1785074 [+], 1179407932365cyanate permease 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1M3Q_16671762764..1763267 [+], 504407932347hypothetical protein A1S_1296

Download FASTA format files
Proteins        Genes
N/A
N/A