SecReT6
I. Summary
SecReT6 ID709 insolico
StrainBordetella parapertussis Bpp5
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018828
Location796556..818260
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101100001
ComponentTssGTssJTssKTssM
Number0111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BN117_0742793215..793721 [-], 507410471491hypothetical protein 
2BN117_0743793728..794522 [-], 795410471492type II secretion system protein 
3BN117_0744 (pilT)794557..795597 [-], 1041410471493twitching mobility protein 
4BN117_0745795832..796407 [+], 576410471494type 4 prepilin-like proteins leader peptide processing enzyme 
5BN117_0746 (vrgS)796556..798895 [+], 2340410471495hypothetical protein  TssI
6BN117_0747798912..799325 [+], 414410471496hypothetical protein 
7BN117_0748799322..801946 [+], 2625410471497hypothetical protein 
8BN117_0751803151..805064 [+], 1914410471498hypothetical protein  TssF
9BN117_0752805142..805750 [+], 609410471499hypothetical protein 
10BN117_0754806767..807300 [+], 534410471500hypothetical protein 
11BN117_0755807290..807667 [+], 378410471501hypothetical protein 
12BN117_0756807691..809964 [+], 2274410471502ATPase  TssH
13BN117_0758810775..811170 [-], 396410471503lipoprotein 
14BN117_0759811435..811977 [+], 543410471504lipoprotein  TssJ
15BN117_0760812023..813357 [+], 1335410471505hypothetical protein  TssK
16BN117_0761813378..814658 [+], 1281410471506outer membrane protein  TssL
17BN117_0762814655..818260 [+], 3606410471507hypothetical protein  TssM
18BN117_0763818257..818991 [+], 735410471508hypothetical protein 
19BN117_0765820089..821255 [+], 1167410471509calcium/proton antiporter 
20BN117_0766821425..822837 [+], 1413410471510lipoprotein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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