SecReT6
I. Summary
SecReT6 ID710 insolico
StrainBordetella bronchiseptica MO149
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018829
Location811198..841039
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BN115_0757806218..807588 [-], 1371410418554hypothetical protein 
2BN115_0758807593..808099 [-], 507410418555hypothetical protein 
3BN115_0759808106..808900 [-], 795410418556type II secretion system protein 
4BN115_0760 (pilT)808935..809975 [-], 1041410418557twitching mobility protein 
5BN115_0761 (gspO)810222..811049 [+], 828410418558type 4 prepilin-like proteins leader peptide processing enzyme 
6BN115_0762 (vrgS)811198..813561 [+], 2364410418559hypothetical protein  TssI
7BN115_0763813578..813991 [+], 414410418560hypothetical protein 
8BN115_0764813988..816612 [+], 2625410418561hypothetical protein 
9BN115_0765816602..817663 [+], 1062410418562hypothetical protein 
10BN115_0766817694..818602 [+], 909410418563hypothetical protein 
11BN115_0767818643..819203 [+], 561410418564hypothetical protein 
12BN115_0768820318..821373 [+], 1056410418565hypothetical protein  TssA
13BN115_0769821416..821985 [+], 570410418566hypothetical protein  TssB
14BN115_0770822007..823509 [+], 1503410418567hypothetical protein  TssC
15BN115_0771823585..824052 [+], 468410418568hypothetical protein  TssD
16BN115_0772824102..824911 [+], 810410418569hypothetical protein  TagJ
17BN115_0773824908..825426 [+], 519410418570hypothetical protein  TssE
18BN115_0774825426..827336 [+], 1911410418571hypothetical protein  TssF
19BN115_0775827371..828030 [+], 660410418572hypothetical protein 
20BN115_0776828027..829121 [+], 1095410418573hypothetical protein  TssG
21BN115_0777829118..829651 [+], 534410418574hypothetical protein 
22BN115_0778829641..830018 [+], 378410418575hypothetical protein 
23BN115_0779830042..832651 [+], 2610410418576ATPase  TssH
24BN115_0780832732..833529 [-], 798410418577hypothetical protein  Fha
25BN115_0781833557..833952 [-], 396410418578lipoprotein 
26BN115_0782834217..834759 [+], 543410418579lipoprotein  TssJ
27BN115_0783834805..836139 [+], 1335410418580hypothetical protein  TssK
28BN115_0784836160..837437 [+], 1278410418581outer membrane protein  TssL
29BN115_0785837434..841039 [+], 3606410418582hypothetical protein  TssM
30BN115_0786841036..841770 [+], 735410418583hypothetical protein 
31BN115_0787841795..843021 [+], 1227410418584hypothetical protein 
32BN115_0788843119..844285 [+], 1167410418585calcium/proton antiporter 
33BN115_0789844459..845871 [+], 1413410418586lipoprotein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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