SecReT6
I. Summary
SecReT6 ID711 insolico
StrainSimiduia agarivorans SA1 = DSM 21679
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018868
Location970710..993136
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1M5M_04395966119..968680 [-], 2562410663445protein kinase 
2M5M_04400969062..970636 [+], 1575410663446FHA domain-containing protein  Fha
3M5M_04405970710..971159 [+], 450410663447hypothetical protein  TssJ
4M5M_04410971193..972527 [+], 1335410663448hypothetical protein  TssK
5M5M_04415972531..973352 [+], 822410663449hypothetical protein  TssL
6M5M_04420973379..976915 [+], 3537410663450hypothetical protein  TssM
7M5M_04425976912..977574 [+], 663410663451type VI secretion-associated protein, BMA_A0400 family 
8M5M_04430977800..979041 [+], 1242410663452type VI secretion-associated protein, ImpA family  TssA
9M5M_04435979090..979608 [+], 519410663453type VI secretion protein  TssB
10M5M_04440979611..981098 [+], 1488410663454type VI secretion protein, EvpB/family  TssC
11M5M_04445981162..982673 [+], 1512410663455type VI secretion protein, EvpB/family  TssC
12M5M_04450982675..983148 [+], 474410663456hypothetical protein  TssE
13M5M_04455983145..984974 [+], 1830410663457hypothetical protein  TssF
14M5M_04460984938..986080 [+], 1143410663458hypothetical protein  TssG
15M5M_04465986090..988741 [+], 2652410663459type VI secretion ATPase, ClpV1 family protein  TssH
16M5M_04470988827..989681 [-], 855410663460Tfp pilus assembly protein, major pilin PilA 
17M5M_04475989726..990019 [-], 294410663461hypothetical protein  PAAR
18M5M_04480990012..990584 [-], 573410663462secreted protein 
19M5M_04485990635..992521 [-], 1887410663463hypothetical protein  TssI
20M5M_04490992648..993136 [-], 489410663464hemolysin-coregulated protein  TssD
21M5M_04495993501..996080 [-], 2580410663465hypothetical protein 
22M5M_04500996112..996615 [-], 504410663466CMP/dCMP deaminase zinc-binding protein 
23M5M_04505996605..997426 [-], 822410663467Ribosomal RNA large subunit methyltransferase A (rRNA (guanine-N(1)-)-methyltransferase) (23S rRNA m1G745 methyltransferase) 
24M5M_04510997408..997653 [-], 246410663468hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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