SecReT6
I. Summary
SecReT6 ID712 insolico
StrainBordetella bronchiseptica 253
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_019382
Location2841413..2870748
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BN112_26202836581..2837993 [-], 1413412339917lipoprotein 
2BN112_26212838167..2839333 [-], 1167412339918calcium/proton antiporter 
3BN112_26222839431..2840657 [-], 1227412339919hypothetical protein 
4BN112_26232840682..2841416 [-], 735412339920hypothetical protein 
5BN112_26242841413..2845018 [-], 3606412339921hypothetical protein  TssM
6BN112_26252845015..2846295 [-], 1281412339922outer membrane protein  TssL
7BN112_26262846316..2847650 [-], 1335412339923hypothetical protein  TssK
8BN112_26272847696..2848238 [-], 543412339924lipoprotein  TssJ
9BN112_26282848503..2848898 [+], 396412339925lipoprotein 
10BN112_26292848926..2849726 [+], 801412339926hypothetical protein  Fha
11BN112_26302849782..2852391 [-], 2610412339927ATPase  TssH
12BN112_26312852415..2852792 [-], 378412339928hypothetical protein 
13BN112_26322852782..2853315 [-], 534412339929hypothetical protein 
14BN112_26332853312..2854406 [-], 1095412339930hypothetical protein  TssG
15BN112_26342854403..2855062 [-], 660412339931hypothetical protein 
16BN112_26352855097..2857010 [-], 1914412339932hypothetical protein  TssF
17BN112_26362857010..2857528 [-], 519412339933hypothetical protein  TssE
18BN112_26372857525..2858334 [-], 810412339934hypothetical protein  TagJ
19BN112_26382858384..2858851 [-], 468412339935hypothetical protein  TssD
20BN112_26392858927..2860429 [-], 1503412339936hypothetical protein  TssC
21BN112_26402860451..2861014 [-], 564412339937hypothetical protein  TssB
22BN112_26412861057..2862106 [-], 1050412339938hypothetical protein  TssA
23BN112_26422862761..2863321 [-], 561412339939hypothetical protein 
24BN112_26432863362..2864252 [-], 891412339940hypothetical protein 
25BN112_26442864283..2865344 [-], 1062412339941hypothetical protein 
26BN112_26452865334..2867958 [-], 2625412339942hypothetical protein 
27BN112_26462867955..2868368 [-], 414412339943hypothetical protein 
28BN112_2647 (vrgS)2868385..2870748 [-], 2364412339944hypothetical protein  TssI
29BN112_2648 (gspO)2870897..2871724 [-], 828412339945type 4 prepilin-like proteins leader peptide processing enzyme 
30BN112_2649 (pilT)2871971..2873011 [+], 1041412339946twitching mobility protein 
31BN112_26502873046..2873840 [+], 795412339947type II secretion system protein 
32BN112_26512873846..2874352 [+], 507412339948hypothetical protein 
33BN112_26522874357..2875727 [+], 1371412339949hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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