SecReT6
I. Summary
SecReT6 ID713 insolico
StrainPseudomonas sp. UW4
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_019670
Location3606319..3633249
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PputUW4_03068 (puuB3)3601411..3602706 [+], 1296426409969gamma-glutamylputrescine oxidase 
2PputUW4_030693602867..3603649 [-], 783426409970DeoR family transcriptional regulator 
3PputUW4_030703604075..3606258 [+], 2184426409971ornithine decarboxylase 
4PputUW4_030713606319..3607476 [-], 1158426409972type VI secretion system OmpA/MotB domain-containing protein  TssA
5PputUW4_03072 (tssE)3607502..3607942 [-], 441426409973type VI secretion system lysozyme-like protein  TssE
6PputUW4_03073 (tssJ)3607945..3608481 [-], 537426409974type VI secretion lipoprotein  TssJ
7PputUW4_030743608462..3609559 [-], 1098426409975type VI secretion protein  TssG
8PputUW4_030753609523..3611286 [-], 1764426409976type VI secretion protein  TssF
9PputUW4_030763611314..3612900 [-], 1587426409977type VI secretion-associated protein  TssA
10PputUW4_03077 (tssM)3612897..3616277 [-], 3381426409978ImcF domain-containing protein  TssM
11PputUW4_030783616287..3617513 [-], 1227426409979hypothetical protein 
12PputUW4_030793617517..3617774 [-], 258426409980PAAR repeat-containing protein  PAAR
13PputUW4_030803617808..3618386 [-], 579426409981hypothetical protein 
14PputUW4_030813618361..3619338 [-], 978426409982hypothetical protein 
15PputUW4_030823619418..3620056 [-], 639426409983hypothetical protein 
16PputUW4_03083 (vgrG1)3620053..3624066 [-], 4014426409984ImpA family type VI secretion-associated protein  TssI
17PputUW4_03084 (clpV)3624063..3626705 [-], 2643426409985ClpV1 family type VI secretion ATPase  TssH
18PputUW4_03085 (hcp)3626852..3627343 [-], 492426409986type VI secretion system effector  TssD
19PputUW4_030863627359..3629086 [-], 1728426409987ompA/MotB domain-containing protein  TagL
20PputUW4_03087 (tssL)3629097..3629780 [-], 684426409988DotU family type IV/VI secretion system protein  TssL
21PputUW4_030883629777..3631132 [-], 1356426409989type VI secretion protein  TssK
22PputUW4_03089 (tssC)3631174..3632712 [-], 1539426409990EvpB family type VI secretion protein  TssC
23PputUW4_03090 (tssB)3632746..3633249 [-], 504426409991type VI secretion protein  TssB
24PputUW4_030913633722..3634540 [-], 819426409992hypothetical protein 
25PputUW4_030923634599..3636320 [-], 1722426409993SulP family sulfate transporter 
26PputUW4_030933636637..3637089 [+], 453426409994hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PputUW4_03085(hcp)3626852..3627343 [-], 492426409986type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
(1) Duan J et al. (2013). The complete genome sequence of the plant growth-promoting bacterium Pseudomonas sp. UW4. PLoS One. 8(3):e58640. [PudMed:23516524] experimental in_silico
 
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation