SecReT6
I. Summary
SecReT6 ID714 insolico
StrainSingulisphaera acidiphila DSM 18658
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_019892
Location2962010..2990091
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Sinac_23992957863..2959038 [+], 1176430743276phosphohydrolase 
2Sinac_24002959161..2959514 [-], 354430743277hypothetical protein 
3Sinac_24012959921..2961498 [-], 1578430743278protein related to regulatory domain of methyltransferases 
4Sinac_24022962010..2964067 [+], 2058430743279Rhs element Vgr protein  TssI
5Sinac_24032964211..2964882 [+], 672430743280hypothetical protein 
6Sinac_24042964887..2965177 [+], 291430743281hypothetical protein  PAAR
7Sinac_24052965255..2966586 [+], 1332430743282hypothetical protein 
8Sinac_24062966635..2967642 [-], 1008430743283type VI secretion protein  TssG
9Sinac_24072967812..2969638 [-], 1827430743284type VI secretion protein  TssF
10Sinac_24082969644..2970129 [-], 486430743285type VI secretion system lysozyme-like protein  TssE
11Sinac_24092970308..2970790 [-], 483430743286hemolysin-coregulated protein  TssD
12Sinac_24102970946..2972439 [-], 1494430743287type VI secretion protein EvpB  TssC
13Sinac_24112972441..2972965 [-], 525430743288type VI secretion protein  TssB
14Sinac_24122973186..2975075 [-], 1890430743289type VI secretion-associated protein, ImpA family  TssA
15Sinac_24132975078..2975938 [-], 861430743290avirulence locus temperature-dependent protein secretion protein  TagJ
16Sinac_24142976415..2977911 [+], 1497430743291FHA domain-containing protein  Fha
17Sinac_24152977926..2979344 [-], 1419430743292hypothetical protein  TssM
18Sinac_24162979371..2979997 [-], 627430743293hypothetical protein  TssL
19Sinac_24172980007..2981401 [-], 1395430743294type VI secretion protein  TssK
20Sinac_24182981828..2985772 [+], 3945430743295hypothetical protein 
21Sinac_24192985964..2987307 [+], 1344430743296transposase family protein 
22Sinac_24202987425..2990091 [-], 2667430743297type VI secretion ATPase, ClpV1 family  TssH
23Sinac_24212991024..2992028 [-], 1005430743298dehydrogenase 
24Sinac_24222992351..2993817 [-], 1467430743299asparaginyl-tRNA synthetase 
25Sinac_24232994153..2994557 [+], 405430743300acetyltransferase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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