SecReT6
I. Summary
SecReT6 ID715 insolico
StrainPseudomonas putida HB3267
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_019905
Location3090329..3115594
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1B479_140553089228..3089689 [-], 462431802745hypothetical protein 
2B479_140603089730..3090179 [-], 450431802746hypothetical protein 
3B479_140653090329..3092182 [-], 1854431802747Rhs element Vgr protein  TssI
4B479_140703092797..3093099 [+], 303431802748hypothetical protein 
5B479_140753093297..3093845 [+], 549431802749hypothetical protein 
6B479_140803093873..3094442 [+], 570431802750hypothetical protein 
7B479_140853094866..3095630 [+], 765431802751hypothetical protein 
8B479_140903095659..3096234 [+], 576431802752type VI secretion protein  TssB
9B479_140953096249..3097751 [+], 1503431802753EvpB family type VI secretion protein  TssC
10B479_141003097778..3098260 [+], 483431802754type VI secretion system lysozyme-like protein  TssE
11B479_141053098260..3100080 [+], 1821431802755type VI secretion protein  TssF
12B479_141103100044..3101114 [+], 1071431802756hypothetical protein  TssG
13B479_141153101111..3103708 [+], 2598431802757type VI secretion ATPase  TssH
14B479_141203103733..3104455 [+], 723431802758putative lipoprotein  TssJ
15B479_141253104452..3105795 [+], 1344431802759type VI secretion protein  TssK
16B479_141303105792..3106508 [+], 717431802760hypothetical protein  TssL
17B479_141353106539..3110342 [+], 3804431802761ImcF domain-containing protein  TssM
18B479_141403110339..3111247 [+], 909431802762hypothetical protein 
19B479_141453111244..3113739 [+], 2496431802763OmpA/MotB domain-containing protein  TssM
20B479_141503113883..3114401 [+], 519431802764Hcp1 family type VI secretion system effector  TssD
21B479_141553114497..3115594 [+], 1098431802765ImpA family type VI secretion-associated protein  TssA
22B479_141603115750..3118266 [+], 2517431802766excinuclease ABC subunit A 
23B479_141653118426..3120075 [+], 1650431802767Major facilitator transporter 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Psyr_4965

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1B479_141503113883..3114401 [+], 519431802764Hcp1 family type VI secretion system effector Psyr_4965

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Proteins        Genes
N/A
N/A