SecReT6
I. Summary
SecReT6 ID716 insolico
StrainPseudomonas putida HB3267
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_019905
Location3811081..3820193
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001011100
ComponentTssGTssJTssKTssM
Number0011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1B479_173353806736..3807047 [+], 312431803399hypothetical protein 
2B479_173403807350..3809464 [+], 2115431803400GAF and PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 
3B479_173453809461..3811050 [+], 1590431803401Pas/Pac sensor-containing chemotaxis sensory transducer 
4B479_173503811081..3814653 [-], 3573431803402ImcF domain-containing protein  TssM
5B479_173553814664..3816154 [-], 1491431803403hypothetical protein  TssA
6B479_173603816142..3816774 [-], 633431803404hypothetical protein 
7B479_173653817075..3817578 [+], 504431803405hypothetical protein  TssB
8B479_173703817596..3819086 [+], 1491431803406hypothetical protein  TssC
9B479_173753819083..3819307 [+], 225431803407type VI secretion protein  TssK
10B479_173803819309..3820193 [+], 885431803408hypothetical protein  TssL
11B479_173853820213..3820809 [+], 597431803409hypothetical protein 
12B479_173903820990..3821244 [+], 255431803410hypothetical protein 
13B479_173953821630..3822532 [+], 903431803411RHS family protein 
14B479_174003822542..3823069 [+], 528431803412hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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