SecReT6
I. Summary
SecReT6 ID717 insolico
StrainPseudomonas stutzeri RCH2
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_019936
Location118402..134370
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number100111111
ComponentTssGTssJTssKTssM
Number1000
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Psest_0116113461..114288 [+], 828431925325hypothetical protein 
2Psest_0117114285..115076 [+], 792431925326hypothetical protein 
3Psest_0118115073..115534 [+], 462431925327hypothetical protein 
4Psest_0119115556..115762 [-], 207431925328hypothetical protein 
5Psest_0120115976..116320 [-], 345431925329hypothetical protein 
6Psest_0121116322..117569 [-], 1248431925330LysM domain-containing protein 
7Psest_0122117575..118429 [-], 855431925331hypothetical protein 
8Psest_0123118402..120501 [-], 2100431925332Rhs element Vgr protein  TssI
9Psest_0124120517..122034 [-], 1518431925333transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains  Sfa2
10Psest_0125122036..124627 [-], 2592431925334type VI secretion ATPase, ClpV1 family  TssH
11Psest_0126124639..125646 [-], 1008431925335type VI secretion protein  TssG
12Psest_0127125610..127400 [-], 1791431925336type VI secretion protein  TssF
13Psest_0128127453..127815 [-], 363431925337hypothetical protein 
14Psest_0129127802..128437 [-], 636431925338hypothetical protein 
15Psest_0130128434..130356 [-], 1923431925339hypothetical protein  PAAR
16Psest_0131130368..130775 [-], 408431925340type VI secretion system lysozyme-like protein  TssE
17Psest_0132130780..132258 [-], 1479431925341type VI secretion protein EvpB  TssC
18Psest_0133132285..132791 [-], 507431925342type VI secretion protein  TssB
19Psest_0134132808..134370 [-], 1563431925343type VI secretion-associated protein  TssA
20Psest_0135134749..135651 [-], 903431925344aldose 1-epimerase-like enzyme 
21Psest_0136135761..136450 [-], 690431925345amino acid ABC transporter 
22Psest_0137136447..137142 [-], 696431925346amino acid ABC transporter 
23Psest_0138137207..137962 [-], 756431925347PAAT family amino acid ABC transporter substrate-binding protein 
24Psest_0139137978..138751 [-], 774431925348amino acid ABC transporter ATP-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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