SecReT6
I. Summary
SecReT6 ID718 insolico
StrainPseudomonas stutzeri RCH2
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_019936
Location4425810..4435819
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001100000
ComponentTssGTssJTssKTssM
Number0111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Psest_42374420955..4422403 [-], 1449431929303succinate semialdehyde dehydrogenase 
2Psest_42384422705..4423169 [+], 465431929304cytochrome c556 
3Psest_42394423207..4423902 [-], 696431929305cytochrome b 
4Psest_42414424454..4424588 [+], 135431929306hypothetical protein 
5Psest_42424424609..4425805 [+], 1197431929307type VI secretion system FHA domain-containing protein  Fha
6Psest_42434425810..4426292 [+], 483431929308type VI secretion lipoprotein  TssJ
7Psest_42444426295..4427626 [+], 1332431929309type VI secretion protein  TssK
8Psest_42454427632..4428513 [+], 882431929310DotU family type IV / VI secretion system protein  TssL
9Psest_42464428515..4432054 [+], 3540431929311type VI secretion protein IcmF  TssM
10Psest_42474432054..4432785 [+], 732431929312serine/threonine protein phosphatase  Stp1
11Psest_42484432782..4433753 [+], 972431929313serine/threonine protein kinase  Stk1
12Psest_42494433774..4435819 [+], 2046431929314Rhs element Vgr protein  TssI
13Psest_42504435828..4436304 [+], 477431929315hypothetical protein 
14Psest_42514436332..4439172 [+], 2841431929316hypothetical protein 
15Psest_42524439173..4439583 [+], 411431929317hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Psest_42184397058..4397576 [-], 519431929284type VI secretion system effector PSPTO_5435

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Proteins        Genes
N/A
N/A