SecReT6
I. Summary
SecReT6 ID719 insolico
StrainVibrio parahaemolyticus BB22OP
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_019955
Location1464178..1493343
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VPBB_13071462563..1464191 [-], 1629433657589Sigma-54 dependent transcriptional regulator, FhlA family 
2VPBB_13081464178..1466850 [-], 2673433657590ClpB protein  TssH
3VPBB_13091467305..1467823 [+], 519433657591TypeVI secretion Hcp protein, biofilm development  TssD
4VPBB_13101467896..1469974 [+], 2079433657592VgrG protein  TssI
5VPBB_13111469974..1470459 [+], 486433657593hypothetical protein 
6VPBB_13121470537..1471856 [+], 1320433657594hypothetical protein 
7VPBB_13131471837..1472829 [+], 993433657595hypothetical protein 
8VPBB_13141472822..1473766 [+], 945433657596hypothetical protein 
9VPBB_13151474001..1476004 [+], 2004433657597hypothetical protein 
10VPBB_13161476004..1477578 [+], 1575433657598Uncharacterized protein ImpA  TssA
11VPBB_13171477605..1478111 [+], 507433657599Uncharacterized protein ImpB  TssB
12VPBB_13181478120..1479595 [+], 1476433657600Uncharacterized protein ImpC  TssC
13VPBB_13191479657..1480067 [+], 411433657601hypothetical protein  TssE
14VPBB_13201480078..1481826 [+], 1749433657602Protein ImpG  TssF
15VPBB_13211481823..1482821 [+], 999433657603Uncharacterized protein ImpH  TssG
16VPBB_13221482885..1483190 [-], 306433657604Transcriptional regulator, AsnC family 
17VPBB_13231483370..1486759 [-], 3390433657605IcmF-related protein  TssM
18VPBB_13241486781..1488076 [-], 1296433657606Uncharacterized protein ImpA  TssA
19VPBB_13251488692..1489195 [+], 504433657607hypothetical protein 
20VPBB_13261489205..1490725 [+], 1521433657608Uncharacterized protein ImpI  Fha
21VPBB_13271490769..1491218 [+], 450433657609Type VI secretion lipoprotein  TssJ
22VPBB_13281491230..1492555 [+], 1326433657610Uncharacterized protein ImpJ  TssK
23VPBB_13291492552..1493343 [+], 792433657611Outer membrane protein ImpK  TssL
24VPBB_13301493493..1495016 [+], 1524433657612hypothetical protein 
25VPBB_13311495016..1495897 [+], 882433657613hypothetical protein 
26VPBB_13321496373..1496507 [+], 135433657614hypothetical protein 
27VPBB_13331496510..1497001 [+], 492433657615hypothetical protein 
28VPBB_13341497186..1497479 [+], 294433657616hypothetical protein 
29VPBB_13351497497..1497616 [-], 120433657617hypothetical protein 
30VPBB_13361497639..1498241 [+], 603433657618SM-20-related protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VP1393

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VPBB_13091467305..1467823 [+], 519433657591TypeVI secretion Hcp protein, biofilm development VP1393

Download FASTA format files
Proteins        Genes
N/A
Regulatory element identified
OpaR
RegulatorDescriptionReference
OpaR (VPBB_2338)RepressorPMID: 21705592

(1) Gode-Potratz CJ et al. (2011). Quorum sensing and silencing in Vibrio parahaemolyticus. J Bacteriol. 193(16):4224-37. [PudMed:21705592] experimental
 
experimental This literature contains experimental investigation