SecReT6
I. Summary
SecReT6 ID72 insolico
StrainBurkholderia pseudomallei K96243
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_006351
Location115016..146918
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BPSS0091110182..110727 [+], 54653721129fimbrial protein 
2BPSS0092110792..111529 [+], 73853721130fimbria-related chaperone 
3BPSS0093111753..114386 [+], 263453721131outer membrane usher protein 
4BPSS0094114379..114951 [+], 57353721132fimbria subunit protein 
5BPSS0095115016..115672 [+], 65753721133hypothetical protein  TssL
6BPSS0096115675..117351 [+], 167753721134OmpA family protein  TagL
7BPSS0097117729..118268 [+], 54053721135hypothetical protein  TssB
8BPSS0098118302..119801 [+], 150053721136hypothetical protein  TssC
9BPSS0099120001..120483 [+], 48353721137hypothetical protein  TssD
10BPSS0100120671..121153 [+], 48353721138hypothetical protein  TssJ
11BPSS0101121159..122508 [+], 135053721139hypothetical protein  TssK
12BPSS0102122505..123806 [+], 130253721140hypothetical protein  TssL
13BPSS0103123821..127729 [+], 390953721141hypothetical protein  TssM
14BPSS0104127919..128488 [+], 57053721142hypothetical protein 
15BPSS0105128553..131252 [+], 270053721143hypothetical protein  TssI
16BPSS0108134954..136312 [-], 135953721144hypothetical protein 
17BPSS0109136345..137373 [-], 102953721145hypothetical protein 
18BPSS0110137428..138498 [-], 107153721146hypothetical protein  TssA
19BPSS0111138517..139566 [-], 105053721147hypothetical protein  TssG
20BPSS0112139563..141443 [-], 188153721148hypothetical protein  TssF
21BPSS0113141445..141963 [-], 51953721149hypothetical protein  TssE
22BPSS0114141950..142804 [-], 85553721150hypothetical protein  TagJ
23BPSS0115142788..143843 [-], 105653721151hypothetical protein 
24BPSS0116144273..146918 [+], 264653721152chaperone-related protein  TssH
25BPSS0117147309..150353 [-], 304553721153histidine kinase/response regulator fusion protein 
26BPSS0118151025..151285 [+], 26153721154hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation