SecReT6
I. Summary
SecReT6 ID720 insolico
StrainVibrio parahaemolyticus BB22OP
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_019971
Location1048650..1070709
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VPBB_A09301046273..1047406 [-], 1134433660100Exonuclease SbcD 
2VPBB_A09311047503..1048345 [-], 843433660101transhydrogenase beta subunit 
3VPBB_A09321048650..1050485 [-], 1836433660102VgrG protein  TssI
4VPBB_A09331050543..1051022 [-], 480433660103Putative cytoplasmic protein USSDB7A  TssD
5VPBB_A09341051228..1053795 [-], 2568433660104ClpA/B-type chaperone  TssH
6VPBB_A09351053806..1054771 [-], 966433660105hypothetical protein  TssG
7VPBB_A09361054768..1056591 [-], 1824433660106Protein ImpG/VasA  TssF
8VPBB_A09371056588..1057052 [-], 465433660107Uncharacterized protein ImpF  TssE
9VPBB_A09381057061..1057858 [-], 798433660108Protein of avirulence locus ImpE  TagJ
10VPBB_A09391057869..1059380 [-], 1512433660109Uncharacterized protein ImpD  TssC
11VPBB_A09401059436..1060929 [-], 1494433660110Uncharacterized protein ImpC  TssC
12VPBB_A09411060929..1061375 [-], 447433660111Uncharacterized protein ImpB  TssB
13VPBB_A09421061475..1062596 [-], 1122433660112Uncharacterized protein ImpA  TssA
14VPBB_A09431062593..1063381 [-], 789433660113putative phosphoprotein phosphatase 
15VPBB_A09441063392..1064087 [-], 696433660114Protein phosphatase ImpM 
16VPBB_A09451064069..1067599 [-], 3531433660115IcmF-related protein  TssM
17VPBB_A09461067603..1068895 [-], 1293433660116Type VI secretion system family protein  TssL
18VPBB_A09471068907..1070196 [-], 1290433660117hypothetical protein  TssK
19VPBB_A09481070254..1070709 [-], 456433660118Type VI secretion protein  TssJ
20VPBB_A09491070719..1071915 [-], 1197433660119hypothetical protein  Fha
21VPBB_A09501072238..1074385 [+], 2148433660120protein kinase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VPA1027

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VPBB_A09331050543..1051022 [-], 480433660103Putative cytoplasmic protein USSDB7A VPA1027

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Proteins        Genes
N/A
Regulatory element identified
OpaR
RegulatorDescriptionReference
OpaR (VPBB_2338)ActivatorPMID: 21705592

(1) Gode-Potratz CJ et al. (2011). Quorum sensing and silencing in Vibrio parahaemolyticus. J Bacteriol. 193(16):4224-37. [PudMed:21705592] experimental
 
experimental This literature contains experimental investigation