SecReT6
I. Summary
SecReT6 ID722 insolico
StrainEnterobacteriaceae bacterium strain FGI 57
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020063
Location3769960..3794919
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1D782_36273765145..3767238 [-], 2094440288967hypothetical protein 
2D782_36283767223..3767777 [-], 555440288968Protein of unknown function (DUF3304) 
3D782_36303768296..3768820 [-], 525440288969Protein of unknown function (DUF3304) 
4D782_36313769183..3769947 [-], 765440288970hypothetical protein 
5D782_36323769960..3772194 [-], 2235440288971Rhs element Vgr protein  TssI
6D782_36333772410..3772928 [-], 519440288972type VI secretion system effector, Hcp1 family  TssD
7D782_36343773631..3774131 [+], 501440288973type VI secretion protein, VC_A0107 family  TssB
8D782_36353774152..3775633 [+], 1482440288974type VI secretion protein, EvpB/VC_A0108 family  TssC
9D782_36363775636..3776064 [+], 429440288975type VI secretion system lysozyme-related protein  TssE
10D782_36373776072..3777892 [+], 1821440288976type VI secretion protein, VC_A0110 family  TssF
11D782_36383777859..3778902 [+], 1044440288977type VI secretion protein, VC_A0111 family  TssG
12D782_36393778907..3780205 [+], 1299440288978type VI secretion system FHA domain protein  Fha
13D782_36403780202..3780735 [+], 534440288979type VI secretion lipoprotein, VC_A0113 family  TssJ
14D782_36413780738..3782081 [+], 1344440288980type VI secretion protein, VC_A0114 family  TssK
15D782_36423782086..3782904 [+], 819440288981type IV / VI secretion system protein, DotU family  TssL
16D782_36433782917..3785592 [+], 2676440288982type VI secretion ATPase, ClpV1 family  TssH
17D782_36443785589..3786296 [+], 708440288983type VI secretion-associated protein, VC_A0118 family 
18D782_36453786302..3787711 [+], 1410440288984type VI secretion-associated protein, VC_A0119 family  TssA
19D782_36463787730..3791251 [+], 3522440288985type VI secretion protein IcmF  TssM
20D782_36473791386..3792294 [+], 909440288986hypothetical protein 
21D782_36483792307..3792828 [+], 522440288987Protein of unknown function (DUF1240) 
22D782_36503793109..3793588 [+], 480440288988type VI secretion system effector, Hcp1 family  TssD
23D782_36513793585..3794919 [+], 1335440288989hypothetical protein  TssA
24D782_36523795117..3795917 [-], 801440288990hypothetical protein 
25D782_36543796371..3797111 [-], 741440288991DNA polymerase III, epsilon subunit 
26D782_36553797166..3797633 [+], 468440288992ribonuclease HI 
27D782_36563797630..3798352 [-], 723440288993methylase involved in ubiquinone/menaquinone biosynthesis 
28D782_36573798385..3799140 [+], 756440288994hydroxyacylglutathione hydrolase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ABG57132

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1D782_36333772410..3772928 [-], 519440288972type VI secretion system effector, Hcp1 family ABG57132

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Proteins        Genes
N/A
N/A