SecReT6
I. Summary
SecReT6 ID724 insolico
StrainSerratia marcescens FGI94
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020064
Location2918666..2954830
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1D781_27662914804..2915019 [+], 216440231409hemolysin expression modulating protein 
2D781_27672915175..2915594 [+], 420440231410universal stress family protein 
3D781_27682915685..2916719 [+], 1035440231411putative NADP-dependent oxidoreductase 
4D781_27692917074..2917220 [+], 147440231412hypothetical protein 
5D781_27702918136..2918639 [+], 504440231413hypothetical protein 
6D781_27712918666..2919193 [+], 528440231414type VI secretion lipoprotein, VC_A0113 family  TssJ
7D781_27722919236..2920582 [+], 1347440231415type VI secretion protein, VC_A0114 family  TssK
8D781_27732920586..2921809 [+], 1224440231416type VI secretion system OmpA/MotB family protein  TssL
9D781_27742921809..2925453 [+], 3645440231417type VI secretion protein IcmF  TssM
10D781_27752925476..2926195 [+], 720440231418type VI secretion-associated protein, BMA_A0400 family 
11D781_27762926225..2927256 [+], 1032440231419type VI secretion-associated protein, ImpA family  TssA
12D781_27772927387..2927926 [+], 540440231420type VI secretion protein, VC_A0107 family  TssB
13D781_27782927930..2929435 [+], 1506440231421type VI secretion protein, EvpB/VC_A0108 family  TssC
14D781_27792929459..2929998 [+], 540440231422hypothetical protein 
15D781_27802929995..2930438 [+], 444440231423hypothetical protein  Rap1b (i)
16D781_27812930631..2931113 [+], 483440231424type VI secretion system effector, Hcp1 family  TssD
17D781_27822931167..2931670 [+], 504440231425hypothetical protein 
18D781_27832931667..2932098 [+], 432440231426hypothetical protein 
19D781_27842932112..2932924 [+], 813440231427hypothetical protein 
20D781_27852932954..2933331 [+], 378440231428hypothetical protein 
21D781_27862933396..2933776 [+], 381440231429hypothetical protein 
22D781_27872933835..2934602 [+], 768440231430hypothetical protein 
23D781_27882934963..2935319 [+], 357440231431hypothetical protein 
24D781_27892935395..2937281 [+], 1887440231432FHA domain protein  Fha
25D781_27902937281..2938054 [+], 774440231433serine/threonine protein phosphatase 
26D781_27912938081..2939076 [+], 996440231434hypothetical protein 
27D781_27922939092..2939913 [+], 822440231435protein of avirulence locus involved in temperature-dependent protein secretion  TagJ
28D781_27932939915..2940493 [+], 579440231436hypothetical protein  TssE
29D781_27942940498..2942384 [+], 1887440231437type VI secretion protein, VC_A0110 family  TssF
30D781_27952942381..2943451 [+], 1071440231438type VI secretion protein, VC_A0111 family  TssG
31D781_27962943535..2946252 [+], 2718440231439type VI secretion ATPase, ClpV1 family  TssH
32D781_27972946299..2947732 [+], 1434440231440serine/threonine protein kinase 
33D781_27982947838..2950423 [+], 2586440231441Rhs element Vgr protein  TssI
34D781_27992950427..2951179 [+], 753440231442hypothetical protein 
35D781_28002951336..2951602 [+], 267440231443hypothetical protein 
36D781_28012951857..2952198 [-], 342440231444hypothetical protein 
37D781_28022952270..2952602 [+], 333440231445hypothetical protein 
38D781_28032952893..2954830 [+], 1938440231446Rhs element Vgr protein  TssI
39D781_28042954827..2955264 [+], 438440231447hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1D781_27812930631..2931113 [+], 483440231424type VI secretion system effector, Hcp1 family SMA2263

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Proteins        Genes

Homology Immunity protein list
SMA2262

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1D781_27802929995..2930438 [+], 444440231423hypothetical protein SMA2262

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Proteins        Genes
N/A