SecReT6
I. Summary
SecReT6 ID725 insolico
StrainMyxococcus stipitatus DSM 14675
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020126
Location6107913..6125605
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1MYSTI_047626104270..6105181 [+], 912442321715alpha/beta fold family hydrolase 
2MYSTI_047636105233..6106198 [-], 966442321716lipoprotein 
3MYSTI_047646106204..6107805 [-], 1602442321717FHA domain-containing protein  Fha
4MYSTI_047656107913..6110534 [-], 2622442321718ATP-dependent chaperone protein ClpB  TssH
5MYSTI_047666110589..6111680 [-], 1092442321719hypothetical protein  TssG
6MYSTI_047676111644..6113386 [-], 1743442321720hypothetical protein  TssF
7MYSTI_047686113416..6113862 [-], 447442321721hypothetical protein  TssE
8MYSTI_047696113879..6114370 [-], 492442321722hypothetical protein  TssD
9MYSTI_047706114514..6115998 [-], 1485442321723hypothetical protein  TssC
10MYSTI_047716116038..6116532 [-], 495442321724hypothetical protein  TssB
11MYSTI_047726116559..6118211 [-], 1653442321725hypothetical protein  TssA
12MYSTI_047736118246..6119184 [-], 939442321726hypothetical protein 
13MYSTI_047746119172..6122837 [-], 3666442321727hypothetical protein  TssM
14MYSTI_047756122848..6123531 [-], 684442321728hypothetical protein  TssL
15MYSTI_047766123624..6125039 [-], 1416442321729hypothetical protein  TssK
16MYSTI_047776125036..6125605 [-], 570442321730hypothetical protein  TssJ
17MYSTI_047786125800..6126765 [-], 966442321731malonyl CoA-acyl carrier protein transacylase 
18MYSTI_047796126799..6128391 [-], 1593442321732hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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