SecReT6
I. Summary
SecReT6 ID728 insolico
StrainPseudomonas poae RE*1-1-14
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020209
Location1471988..1488575
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1H045_067601467921..1468415 [-], 495447916352hypothetical protein 
2H045_067651468522..1469343 [+], 822447916353putative aldo/keto reductase 
3H045_067701469411..1469926 [-], 516447916354hypothetical protein  TssD
4H045_067751470483..1471952 [+], 1470447916355hypothetical protein  TssA
5H045_067801471988..1472485 [+], 498447916356hypothetical protein  TssB
6H045_067851472511..1473986 [+], 1476447916357type VI secretion protein TssC2  TssC
7H045_067901474001..1474402 [+], 402447916358GPW/gp25 family protein  TssE
8H045_067951474392..1476179 [+], 1788447916359type VI secretion protein TssF2  TssF
9H045_068001476143..1477150 [+], 1008447916360type VI secretion protein TssG2  TssG
10H045_068051477163..1479601 [+], 2439447916361ClpA/B-type protease  TssH
11H045_068101479598..1481118 [+], 1521447916362sigma-54 dependent transcriptional regulator, Fis family protein  Sfa2
12H045_068151481187..1481330 [+], 144447916363type VI secretion-associated lipoprotein TagU 
13H045_068201481333..1482505 [+], 1173447916364type VI secretion protein Fha2  Fha
14H045_068251482535..1482996 [+], 462447916365type VI secretion lipoprotein TssJ2  TssJ
15H045_068301482998..1484326 [+], 1329447916366type VI secretion protein TssK2  TssK
16H045_068351484332..1485198 [+], 867447916367putative outer membrane protein  TssL
17H045_068401485243..1488575 [+], 3333447916368type VI secretion protein IcmF  TssM
18H045_068451488572..1489291 [+], 720447916369serine/threonine phosphoprotein phosphatase Stp1  Stp1
19H045_068501489288..1490124 [+], 837447916370serine-threonine kinase Stk1  Stk1
20H045_068551490132..1490461 [-], 330447916371hypothetical protein 
21H045_068601490484..1490738 [-], 255447916372hypothetical protein 
22H045_068651490892..1492502 [-], 1611447916373ABC transporter ATP-binding protein 
23H045_068701492504..1493523 [-], 1020447916374putative oligopeptide ABC transporter membrane protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1H045_067701469411..1469926 [-], 516447916354hypothetical protein PSPTO_5435

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Proteins        Genes
N/A
N/A