SecReT6
I. Summary
SecReT6 ID729 insolico
StrainPseudomonas poae RE*1-1-14
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020209
Location4622154..4643379
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1H045_203554617815..4620787 [-], 2973447919061serine/threonine protein kinase PpkA  PpkA
2H045_203604620784..4621503 [-], 720447919062putative phosphatase  PppA
3H045_203654621504..4622157 [-], 654447919063type VI secretion-associated protein TagF  TagF
4H045_203704622154..4625654 [-], 3501447919064hypothetical protein  TssM
5H045_203754625651..4626940 [-], 1290447919065hypothetical protein  TssL
6H045_203804626947..4628281 [-], 1335447919066hypothetical protein  TssK
7H045_203854628300..4628809 [-], 510447919067type VI secretion lipoprotein TssJ1  TssJ
8H045_203904628864..4630087 [-], 1224447919068type VI secretion protein Fha1  Fha
9H045_203954630563..4631582 [+], 1020447919069type VI secretion protein TssA1  TssA
10H045_204004631637..4632143 [+], 507447919070hypothetical protein  TssB
11H045_204054632146..4633642 [+], 1497447919071type VI secretion protein TssC1  TssC
12H045_204104633815..4634303 [+], 489447919072type VI secretion system effector Hcp1  TssD
13H045_204154634384..4634821 [+], 438447919073hypothetical protein 
14H045_204204634818..4635264 [+], 447447919074hypothetical protein 
15H045_204254635258..4635773 [+], 516447919075hypothetical protein  TssE
16H045_204304635770..4637629 [+], 1860447919076type VI secretion protein TssF  TssF
17H045_204354637626..4638636 [+], 1011447919077type VI secretion protein TssG1  TssG
18H045_204404638629..4641283 [+], 2655447919078type VI secretion ATPase ClpV1  TssH
19H045_204454641439..4643379 [+], 1941447919079hypothetical protein  TssI
20H045_204504643394..4643828 [+], 435447919080hypothetical protein 
21H045_204554643901..4648271 [+], 4371447919081hypothetical protein  PAAR
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA0085 , PA0091

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1H045_204104633815..4634303 [+], 489447919072type VI secretion system effector Hcp1 PA0085
2H045_204454641439..4643379 [+], 1941447919079hypothetical protein PA0091

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Proteins        Genes
N/A
N/A