SecReT6
I. Summary
SecReT6 ID731 insolico
StrainSerratia marcescens WW4
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020211
Location3387021..3410437
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1SMWW4_v1c313903383353..3384222 [-], 870448242899hypothetical protein 
2SMWW4_v1c314003384331..3384906 [-], 576448242900hypothetical protein 
3SMWW4_v1c314103385613..3385903 [-], 291448242901hypothetical protein 
4SMWW4_v1c314203386149..3386376 [+], 228448242902hypothetical protein 
5SMWW4_v1c314303386461..3386574 [-], 114448242903hypothetical protein 
6SMWW4_v1c314403386642..3386995 [-], 354448242904hypothetical protein 
7SMWW4_v1c314503387021..3390500 [-], 3480448242905type VI secretion protein IcmF  TssM
8SMWW4_v1c314603390536..3392047 [-], 1512448242906hypothetical protein  TssL
9SMWW4_v1c314703392044..3393402 [-], 1359448242907hypothetical protein  TssK
10SMWW4_v1c314803393404..3393910 [-], 507448242908hypothetical protein  TssJ
11SMWW4_v1c314903393920..3394285 [-], 366448242909hypothetical protein  PAAR
12SMWW4_v1c315003394292..3394906 [-], 615448242910hypothetical protein 
13SMWW4_v1c315103394899..3396053 [-], 1155448242911hypothetical protein 
14SMWW4_v1c315203396043..3398268 [-], 2226448242912hypothetical protein 
15SMWW4_v1c315303398281..3400542 [-], 2262448242913hypothetical protein  TssI
16SMWW4_v1c31540 (clpV)3400607..3403192 [-], 2586448242914type VI secretion ATPase, ClpV family  TssH
17SMWW4_v1c31550 (tssG)3403209..3404237 [-], 1029448242915type VI secretion protein, TssG family  TssG
18SMWW4_v1c31560 (tssF)3404230..3406071 [-], 1842448242916type VI secretion protein, TssF family  TssF
19SMWW4_v1c315703406083..3406529 [-], 447448242917hypothetical protein  TssE
20SMWW4_v1c315803406611..3407135 [-], 525448242918hypothetical protein  TssD
21SMWW4_v1c315903407367..3408893 [-], 1527448242919hypothetical protein  TssC
22SMWW4_v1c31600 (tssB)3408890..3409447 [-], 558448242920type VI secretion protein, TssB family  TssB
23SMWW4_v1c316103409472..3410437 [-], 966448242921ImpA domain protein  TssA
24SMWW4_v1c316203411474..3411665 [+], 192448242922hypothetical protein 
25SMWW4_v1c316303412047..3412481 [+], 435448242923hypothetical protein 
26SMWW4_v1c316403412539..3413171 [-], 633448242924hypothetical protein 
27SMWW4_v1c316503413291..3413761 [-], 471448242925hypothetical protein 
28SMWW4_v1c316603413751..3415238 [-], 1488448242926putative 3-polyprenyl-4-hydroxybenzoate decarboxylase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563 , SMA3455, SMA3456, SMA3980

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SMWW4_v1c315803406611..3407135 [-], 525448242918hypothetical protein YPK_3563
2SMWW4_v1c414904490932..4491414 [+], 483448243902type VI secretion system effector SMA3455
3SMWW4_v1c415004491462..4491944 [+], 483448243903type VI secretion system effector SMA3456
4SMWW4_v1c468905079351..5080346 [-], 996448244442hypothetical protein SMA3980

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Proteins        Genes

Homology Immunity protein list
SMA3979

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SMWW4_v1c468805078773..5079351 [-], 579448244441hypothetical protein SMA3979

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Proteins        Genes
N/A