SecReT6
I. Summary
SecReT6 ID733 insolico
StrainCronobacter sakazakii Sp291
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020260
Location3860812..3907386
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1CSSP291_180503855834..3860381 [-], 4548449310106hypothetical protein  PAAR
2CSSP291_180553860384..3860815 [-], 432449310107hypothetical protein 
3CSSP291_180603860812..3862743 [-], 1932449310108type VI secretion system Vgr family protein  TssI
4CSSP291_180653862921..3863055 [+], 135449310109hypothetical protein 
5CSSP291_180703863444..3863962 [-], 519449310110hypothetical protein 
6CSSP291_180753864063..3864494 [-], 432449310111hypothetical protein 
7CSSP291_180803864679..3865056 [-], 378449310112hypothetical protein 
8CSSP291_180853865211..3865732 [-], 522449310113hypothetical protein 
9CSSP291_180903865843..3866943 [-], 1101449310114hypothetical protein 
10CSSP291_180953866957..3867505 [-], 549449310115hypothetical protein 
11CSSP291_181003867782..3868063 [-], 282449310116hypothetical protein 
12CSSP291_181053868066..3872031 [-], 3966449310117hypothetical protein 
13CSSP291_181103872249..3872929 [-], 681449310118hypothetical protein 
14CSSP291_181153873027..3874322 [-], 1296449310119hypothetical protein 
15CSSP291_181203874315..3875469 [-], 1155449310120hypothetical protein 
16CSSP291_181253875471..3877609 [-], 2139449310121hypothetical protein  TssI
17CSSP291_181303877750..3878442 [-], 693449310122hypothetical protein 
18CSSP291_181353878508..3879938 [-], 1431449310123hypothetical protein 
19CSSP291_181403880063..3881502 [-], 1440449310124hypothetical protein 
20CSSP291_181453881533..3884148 [-], 2616449310125hypothetical protein  TssH
21CSSP291_181503884365..3885408 [-], 1044449310126type VI secretion system protein ImpH  TssG
22CSSP291_181553885405..3887276 [-], 1872449310127type VI secretion system protein ImpG  TssF
23CSSP291_181603887279..3887851 [-], 573449310128type VI secretion system protein ImpF  TssE
24CSSP291_181653887844..3888677 [-], 834449310129hypothetical protein  TagJ
25CSSP291_181703888703..3889707 [-], 1005449310130hypothetical protein 
26CSSP291_181753889726..3890520 [-], 795449310131protein serine/threonine phosphatase 
27CSSP291_181803890517..3892433 [-], 1917449310132type VI secretion system FHA domain-containing protein  Fha
28CSSP291_181853892533..3892946 [-], 414449310133hypothetical protein 
29CSSP291_181903892943..3893932 [-], 990449310134hypothetical protein 
30CSSP291_181953894382..3894750 [-], 369449310135hypothetical protein 
31CSSP291_182003894798..3895280 [-], 483449310136Hcp1 family type VI secretion system effector  TssD
32CSSP291_182053895537..3896031 [-], 495449310137hypothetical protein 
33CSSP291_182103896028..3896297 [-], 270449310138hypothetical protein 
34CSSP291_182153896775..3898274 [-], 1500449310139type VI secretion system protein ImpC  TssC
35CSSP291_182203898278..3898796 [-], 519449310140type VI secretion system protein ImpB  TssB
36CSSP291_182253898878..3899900 [-], 1023449310141hypothetical protein  TssA
37CSSP291_182303899910..3900620 [-], 711449310142hypothetical protein 
38CSSP291_182353900637..3904257 [-], 3621449310143type VI secretion system protein ImpL  TssM
39CSSP291_182403904259..3905494 [-], 1236449310144hypothetical protein  TssL
40CSSP291_182453905512..3906855 [-], 1344449310145type VI secretion system protein ImpJ  TssK
41CSSP291_182503906880..3907386 [-], 507449310146type VI secretion lipoprotein, VC_A0113 family 2  TssJ
42CSSP291_182553907411..3907905 [-], 495449310147hypothetical protein 
43CSSP291_182603909301..3909753 [+], 453449310148hypothetical protein 
44CSSP291_18265 (emrD)3909965..3911143 [+], 1179449310149multidrug resistance protein D 
45CSSP291_182703911046..3912143 [-], 1098449310150hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1CSSP291_182003894798..3895280 [-], 483449310136Hcp1 family type VI secretion system effector SMA2263

Download FASTA format files
Proteins        Genes
N/A
N/A