SecReT6
I. Summary
SecReT6 ID735 insolico
StrainDesulfocapsa sulfexigens DSM 10523
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020304
Location2996794..3025122
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1UWK_026852992015..2993664 [-], 1650451948279serine/threonine protein kinase 
2UWK_026862993661..2994602 [-], 942451948280hypothetical protein 
3UWK_026872994599..2995339 [-], 741451948281serine/threonine protein phosphatase 
4UWK_026882995497..2995697 [+], 201451948282hypothetical protein 
5UWK_026892995681..2996703 [+], 1023451948283FHA domain-containing protein  Fha
6UWK_026902996794..2998362 [+], 1569451948284hypothetical protein  TssC
7UWK_026912998408..2999175 [-], 768451948285hypothetical protein 
8UWK_026922999201..2999980 [-], 780451948286hypothetical protein 
9UWK_026932999988..3001454 [-], 1467451948287FHA domain-containing protein  Fha
10UWK_026943001464..3001871 [-], 408451948288hypothetical protein 
11UWK_026953001884..3002534 [-], 651451948289Protein of unknown function (DUF3540) 
12UWK_026963002564..3003619 [-], 1056451948290putative low-complexity protein 
13UWK_026973003630..3006197 [-], 2568451948291pentapeptide repeat protein 
14UWK_026983006204..3008492 [-], 2289451948292Rhs element Vgr protein  TssI
15UWK_026993008492..3011143 [-], 2652451948293type VI secretion ATPase, ClpV1 family  TssH
16UWK_027003011180..3012208 [-], 1029451948294type VI secretion protein, VC_A0111 family  TssG
17UWK_027013012172..3013905 [-], 1734451948295type VI secretion protein, VC_A0110 family  TssF
18UWK_027023013920..3014333 [-], 414451948296type VI secretion system lysozyme-related protein  TssE
19UWK_027033014384..3014872 [-], 489451948297type VI secretion system effector, Hcp1 family  TssD
20UWK_027043014955..3016442 [-], 1488451948298type VI secretion protein, EvpB/VC_A0108 family  TssC
21UWK_027053016452..3016940 [-], 489451948299type VI secretion protein, VC_A0107 family  TssB
22UWK_027063017105..3018685 [-], 1581451948300type VI secretion-associated protein, VC_A0119 family  TssA
23UWK_027073018704..3022519 [-], 3816451948301hypothetical protein  TssM
24UWK_027083022519..3023193 [-], 675451948302type IV / VI secretion system protein, DotU family  TssL
25UWK_027093023196..3024581 [-], 1386451948303type VI secretion protein, VC_A0114 family  TssK
26UWK_027103024592..3025122 [-], 531451948304type VI secretion lipoprotein, VC_A0113 family  TssJ
27UWK_027113025127..3025864 [-], 738451948305hypothetical protein 
28UWK_027123025861..3027135 [-], 1275451948306hypothetical protein 
29UWK_027133027302..3028573 [-], 1272451948307ABC-type antimicrobial peptide transport system, permease component 
30UWK_027143028557..3029243 [-], 687451948308ABC-type antimicrobial peptide transport system, ATPase component 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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