SecReT6
I. Summary
SecReT6 ID736 insolico
StrainAzoarcus sp. KH32C
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020516
Location1952470..1974979
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AZKH_17411947511..1948977 [-], 1467470170144major facilitator superfamily MFS_1 
2AZKH_17421949119..1949907 [+], 789470170145transcriptional regulator, GntR family 
3AZKH_17431949915..1950655 [-], 741470170146transcriptional regulator, GntR family 
4AZKH_17441950931..1952382 [+], 1452470170147dihydropyrimidinase 
5AZKH_17451952470..1953549 [+], 1080470170148hypothetical protein  TssA
6AZKH_17461953613..1954395 [-], 783470170149OmpA/MotB domain-containing protein  TagL
7AZKH_17471954392..1955360 [-], 969470170150hypothetical protein 
8AZKH_17481955375..1959136 [-], 3762470170151hypothetical protein  TssM
9AZKH_17491959162..1960577 [-], 1416470170152hypothetical protein 
10AZKH_17501960600..1960866 [-], 267470170153hypothetical protein  PAAR
11AZKH_17511960917..1961771 [-], 855470170154hypothetical protein 
12AZKH_17521962029..1962607 [+], 579470170155hypothetical protein 
13AZKH_17531962638..1963408 [-], 771470170156hypothetical protein  TssL
14AZKH_17541963405..1964610 [-], 1206470170157hypothetical protein  TssK
15AZKH_17551964380..1964664 [+], 285470170158hypothetical protein 
16AZKH_17561964762..1965277 [-], 516470170159hypothetical protein  TssJ
17AZKH_17571965676..1966191 [+], 516470170160hypothetical protein 
18AZKH_17581966318..1966800 [+], 483470170161hypothetical protein  TssB
19AZKH_17591966797..1968275 [+], 1479470170162hypothetical protein  TssC
20AZKH_17601968315..1968851 [+], 537470170163hypothetical protein  TssD
21AZKH_17611968916..1969395 [+], 480470170164hypothetical protein  TssE
22AZKH_17621969396..1971234 [+], 1839470170165hypothetical protein  TssF
23AZKH_17631971198..1972256 [+], 1059470170166hypothetical protein  TssG
24AZKH_17641972277..1974979 [+], 2703470170167putative ATP-dependent Clp protease  TssH
25AZKH_1765 (hasD/prtD)1975058..1976797 [+], 1740470170168type I secretion system ATPase, ATP-binding cassette, subfamily C, bacterial HasD 
26AZKH_1766 (hlyD)1976827..1978125 [+], 1299470170169HlyD-family type I secretion protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A